CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021519.1-P	Field mustard	nucleus	94.53	56.54
CDY67555	Canola	nucleus	91.8	54.78
AT3G13940.1	Thale cress	nucleus	59.38	34.39
PGSC0003DMT400006250	Potato	cytosol	23.83	33.89
VIT_09s0002g01860.t01	Wine grape	nucleus	47.66	28.98
KRH12306	Soybean	nucleus	47.66	28.77
PGSC0003DMT400042035	Potato	nucleus	44.92	26.68
GSMUA_AchrUn_...	Banana	nucleus	34.77	20.99
TraesCS4A01G151300.1	Wheat	nucleus	31.64	19.24
TraesCS4B01G158200.1	Wheat	nucleus	31.64	19.24
TraesCS4D01G154400.1	Wheat	nucleus, plastid	31.64	19.24
Solyc06g053330.2.1	Tomato	nucleus	45.7	18.84
Os11t0615100-01	Rice	nucleus	31.64	16.74
HORVU4Hr1G033420.3	Barley	nucleus	27.73	16.59
OQU83842	Sorghum	nucleus	28.52	14.72
Zm00001d048834_P001	Maize	nucleus	28.91	14.71

Protein Annotations

MapMan:15.2.5.2	GO:A0A078K176	UniProt:A0A078K176	EnsemblPlants:CDY71531	ProteinID:CDY71531	ProteinID:CDY71531.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00016891001
PFAM:PF06870	PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI0004EF158F	:	:

Description

BnaA01g37360DBnaA01g37360D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K176]

Coordinates

chrLK046249:+:3..1363

Molecular Weight (calculated)

29333.1 Da

IEP (calculated)

8.881

GRAVY (calculated)

-0.525

Length

256 amino acids

Sequence
(BLAST)

001: SKFNLVEDCS VCIQDKKRKA RILRDDPEAQ KALEGKLDKV EVNTSALENT SAVVARNIPP HNASATNPSE AYPIEQIIEN GEWSSLQDVY WLLQEEAGAA
101: TDGYPAFVRN RLYRLRDNKD ETEKETAAGI LTFITHLIKF KDVNSMVGLE SARSHRFPPT IREKCNRLFK DSETSRLPDD KINLLISYVL VLTLHVDKFK
201: TDFEDIAKDL RMSSVDLRKH FENLGCKFAV ENSIRVATLP VPLKFPQIMR RRTKRR

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.