CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g01860.t01	Wine grape	nucleus	53.3	53.68
CDY71531	Canola	cytosol, nucleus	28.77	47.66
PGSC0003DMT400042035	Potato	nucleus	48.11	47.33
PGSC0003DMT400006250	Potato	cytosol	19.58	46.11
Bra021519.1-P	Field mustard	nucleus	43.87	43.46
CDY67555	Canola	nucleus	43.16	42.66
AT3G13940.1	Thale cress	nucleus	44.1	42.31
GSMUA_AchrUn_...	Banana	nucleus	41.04	41.04
TraesCS4A01G151300.1	Wheat	nucleus	37.26	37.53
TraesCS4D01G154400.1	Wheat	nucleus, plastid	37.26	37.53
TraesCS4B01G158200.1	Wheat	nucleus	36.32	36.58
HORVU4Hr1G033420.3	Barley	nucleus	35.85	35.51
Solyc06g053330.2.1	Tomato	nucleus	47.88	32.69
Os11t0615100-01	Rice	nucleus	35.85	31.41
OQU83842	Sorghum	nucleus	34.43	29.44
Zm00001d048834_P001	Maize	nucleus	34.43	29.03

Protein Annotations

EntrezGene:100812427	MapMan:15.2.5.2	EMBL:ACUP02009289	EnsemblPlantsGene:GLYMA_15G165300	GO:GO:0001054	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139
GO:GO:0006351	GO:GO:0006360	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	UniProt:I1MH26	EnsemblPlants:KRH12306	ProteinID:KRH12306	ProteinID:KRH12306.1	PFAM:PF06870
PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI000233C14A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:14340907..14344346

Molecular Weight (calculated)

48782.6 Da

IEP (calculated)

10.045

GRAVY (calculated)

-0.721

Length

424 amino acids

Sequence
(BLAST)

001: MDSDTEETKP KHPKKEKKKK NKKKEVEVVQ PQSEQIEVEV EVVREHPNKT PPVVGYFPSG FDPVKNHGGG PSNFQVYRHR SMPKRLELVV RPPRSSVEFV
101: GTSYAGEAAA RHRAKYALGV LDKEAGTLKV VPIAGNKIFR LEPKVKGVGA FENEPANSTL EEMTQQQKFA ETTSIWGTKK DIEKAKKKLA LRQDEDPDSQ
201: RNLDVKMKSV TVNKKALEST ESHVSRNIPP YDASATTPQE AYILDKIILK GEWDYLEDIY NNLQRGEEAD FSAYPTFVRN RIERLRKIKD ESEKKQLSCI
301: FSYINHLIKF KDQHSFDVLS AKGHKIPNIL RHKFSNMFAV SESKRLPPEK ISLLICYVLV LTLFSDEFRT DYTDIAKDLS MNILPVRQLY EHLGCKISRQ
401: KNIFYATLPV PLKFPELRQR KRKR

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.