CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048834_P001	Maize	nucleus	70.16	69.18
TraesCS4A01G151300.1	Wheat	nucleus	57.86	68.17
TraesCS4B01G158200.1	Wheat	nucleus	57.66	67.93
TraesCS4D01G154400.1	Wheat	nucleus, plastid	57.46	67.7
HORVU4Hr1G033420.3	Barley	nucleus	54.84	63.55
Os11t0615100-01	Rice	nucleus	57.66	59.09
GSMUA_AchrUn_...	Banana	nucleus	40.93	47.88
PGSC0003DMT400006250	Potato	cytosol	13.51	37.22
VIT_09s0002g01860.t01	Wine grape	nucleus	30.65	36.1
PGSC0003DMT400042035	Potato	nucleus	30.04	34.57
KRH12306	Soybean	nucleus	29.44	34.43
CDY71531	Canola	cytosol, nucleus	14.72	28.52
Bra021519.1-P	Field mustard	nucleus	24.6	28.5
CDY67555	Canola	nucleus	24.6	28.44
AT3G13940.1	Thale cress	nucleus	23.59	26.47
Solyc06g053330.2.1	Tomato	nucleus	31.05	24.8

Protein Annotations

MapMan:15.2.5.2	UniProt:A0A1Z5RJB7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlants:OQU83842	ProteinID:OQU83842	ProteinID:OQU83842.1	PFAM:PF06870	PANTHER:PTHR14440
InterPro:RNA_pol-assoc_fac_A49-like	EnsemblPlantsGene:SORBI_3005G187400	UniParc:UPI000B425EA1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:67232906..67236298

Molecular Weight (calculated)

54602.0 Da

IEP (calculated)

6.291

GRAVY (calculated)

-0.604

Length

496 amino acids

Sequence
(BLAST)

001: MADAETLSTP PRASASPASA STKKKKKKKH SKKHKATDEA PTDATVEATT DVTDEAPTDA TDEAPTDVTD EATTDVTDEA PTDVIEEVPT NVTVDASLTG
101: GSSYAAAAPV VGYFPSGYDP LAAAGAESAP RTRLFRHEKH PTWVDLVVRS PGGGPDFVGR SYAGEAAVPQ ICEYALGVLD KASGTLRVVP ITAKKILRLE
201: PHHEVQRPAH SQHSEVASEA ASAAGNDELK VQDLTMMYGA KMDRDKDNKW RSLNEQRNDP SAFEDIDLGG SETAANIIDS QEPVLTRNIP PYDPTADTSE
301: KAYLLDEIIP KSMRQHLLEI IHHFESGEFS SKGYGSFVSK RVHKLNELQG EDKERFAWIL SYIQHLLSLF ARNGSMSKSQ RKWRNENQTN RGPATPPAVY
401: HRLLLMFTEP GSRVMSTEKN ELLTNYILVL TLFADDFRSS PNDICEDLKM TYQKLKPYYD QLGCKSVSLG PFKGSAVTLP APLKFPTDVT RKRRRR

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.