Factsheet for Bra021519.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71531	Canola	cytosol, nucleus	56.54	94.53
AT3G13940.1	Thale cress	nucleus	54.91	53.17
KRH12306	Soybean	nucleus	43.46	43.87
VIT_09s0002g01860.t01	Wine grape	nucleus	41.59	42.28
PGSC0003DMT400042035	Potato	nucleus	41.12	40.84
PGSC0003DMT400006250	Potato	cytosol	15.89	37.78
GSMUA_AchrUn_...	Banana	nucleus	34.58	34.91
TraesCS4D01G154400.1	Wheat	nucleus, plastid	31.54	32.07
TraesCS4A01G151300.1	Wheat	nucleus	31.31	31.83
TraesCS4B01G158200.1	Wheat	nucleus	31.07	31.59
HORVU4Hr1G033420.3	Barley	nucleus	28.74	28.74
Solyc06g053330.2.1	Tomato	nucleus	41.36	28.5
Os11t0615100-01	Rice	nucleus	29.91	26.45
Zm00001d048834_P001	Maize	nucleus	28.97	24.65
OQU83842	Sorghum	nucleus	28.5	24.6

Protein Annotations

MapMan:15.2.5.2	EnsemblPlantsGene:Bra021519	EnsemblPlants:Bra021519.1	EnsemblPlants:Bra021519.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	UniProt:M4DYC3	PFAM:PF06870	PANTHER:PTHR14440
InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI000254455F	SEG:seg	:	:	:

Description

AT3G13940 (E=2e-108) | DNA binding / DNA-directed RNA polymerase

Coordinates

chrA01:+:24811436..24813559

Molecular Weight (calculated)

48622.8 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.716

Length

428 amino acids

Sequence
(BLAST)

001: MADKHQNDFM DEGDDFKTPQ PLEKKKKKKK KKTTAIETES PRSIDITVKQ ISEKSDRIPP IVAYFSSGYD PSAQSREPPK VAVYQTASRK RTRVVVSPQG
101: SNVEFVGSSH NGEQIARQTC VSVLGVLDKE TQTLRILPIA HQKVLRLDTR VKGNEAGDSE AAEEDGEEEK ADPSLHTFWT KRAILDDKKR KARILRDDPE
201: AQKALEGKLD KVEVNTSALE NTSAVVARNI PPHNASATNP REAYPIEQII ENGEWSSLQD VYWLLQEEAG AATDGYPAFV RNRLYRLRDN KDENEKETAA
301: GILTFITHLI KFKDVNSMVG LESARSHRFP PTIREKCNRL FKDSETSRLP DDKINLLISY VLVLTLHVDK FKTDFEDIAK DLRMSSVDLR KHFENLGCKF
401: AVENSIRVAT LPVPLKFPQI MRRRTKRR

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.