Factsheet for TraesCS4A01G151300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G158200.1	Wheat	nucleus	96.67	96.67
TraesCS4D01G154400.1	Wheat	nucleus, plastid	96.2	96.2
HORVU4Hr1G033420.3	Barley	nucleus	89.31	87.85
Os11t0615100-01	Rice	nucleus	68.65	59.71
OQU83842	Sorghum	nucleus	68.17	57.86
Zm00001d048834_P001	Maize	nucleus	68.17	57.06
GSMUA_AchrUn_...	Banana	nucleus	48.46	48.11
VIT_09s0002g01860.t01	Wine grape	nucleus	39.43	39.43
PGSC0003DMT400006250	Potato	cytosol	16.39	38.33
PGSC0003DMT400042035	Potato	nucleus	38.95	38.05
KRH12306	Soybean	nucleus	37.53	37.26
CDY71531	Canola	cytosol, nucleus	19.24	31.64
CDY67555	Canola	nucleus	32.07	31.47
Bra021519.1-P	Field mustard	nucleus	31.83	31.31
AT3G13940.1	Thale cress	nucleus	32.07	30.54
Solyc06g053330.2.1	Tomato	nucleus	38.72	26.25

Protein Annotations

MapMan:15.2.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
PFAM:PF06870	PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	EnsemblPlantsGene:TraesCS4A01G151300	EnsemblPlants:TraesCS4A01G151300.1	SEG:seg

Description

No Description!

Coordinates

chr4A:-:302718017..302721135

Molecular Weight (calculated)

46895.0 Da

IEP (calculated)

9.695

GRAVY (calculated)

-0.578

Length

421 amino acids

Sequence
(BLAST)

001: MASHETDPSP AAPSKKKKRH SKKRKAIEVT VDASFPGAAA PVVGYFPTGY DPLAAAEPPR ARLFRHEKHH NRVELVVRAP GGGPDFVGRS YAGEAAAPQL
101: CGYALGVLDK ATSTLKIVPI ASNKILRLEP HFEVQQPAHS QQSAAEAGSS VADTELNRQD LTQAYGTKKD KDKDNKWKSL KEQRNDPSAY LDLDLGESKT
201: TADATDSQAS MEVRNIPPYD PAADTSEKAY LFDEIIPKNI RPHLLDIVGH FESGEFGLKG YGSFVSNRVN KLQELQGEDQ ERLAWILSYI THLLSLLARN
301: SSMSKQKRKE KDQTIRGPMI PQAVHRKLLL MFTEPGSSSL STEKHELLIN YILVLTLFAD DFRSEPTDIC ADLKMNRQML KPYYDQLGCK SVSTGAFKPV
401: FMTLPAPLKF PQQVTRRRRR K

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.