Factsheet for Os11t0615100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G154400.1	Wheat	nucleus, plastid	60.33	69.36
TraesCS4A01G151300.1	Wheat	nucleus	59.71	68.65
TraesCS4B01G158200.1	Wheat	nucleus	59.3	68.17
HORVU4Hr1G033420.3	Barley	nucleus	56.82	64.25
OQU83842	Sorghum	nucleus	59.09	57.66
Zm00001d048834_P001	Maize	nucleus	57.64	55.47
GSMUA_AchrUn_...	Banana	nucleus	40.29	45.99
PGSC0003DMT400006250	Potato	cytosol	14.26	38.33
VIT_09s0002g01860.t01	Wine grape	nucleus	32.23	37.05
PGSC0003DMT400042035	Potato	nucleus	32.64	36.66
KRH12306	Soybean	nucleus	31.41	35.85
CDY71531	Canola	cytosol, nucleus	16.74	31.64
CDY67555	Canola	nucleus	26.65	30.07
Bra021519.1-P	Field mustard	nucleus	26.45	29.91
AT3G13940.1	Thale cress	nucleus	25.41	27.83
Solyc06g053330.2.1	Tomato	nucleus	33.68	26.25

Protein Annotations

MapMan:15.2.5.2	EntrezGene:4350918	ProteinID:ABA94691.1	EMBL:AK069228	ProteinID:BAF28637.1	ProteinID:BAT14853.1
GO:GO:0001054	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:Os11g0615100	EnsemblPlants:Os11t0615100-01	PFAM:PF06870
PANTHER:PTHR14440	UniProt:Q2R177	InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI0000681E82	RefSeq:XP_015615173.1	SEG:seg

Description

Pol I subunit RPA49, RNA polymerase II subunit RPA49RNA polymerase I associated factor, A49-like domain containing protein. (Os11t0615100-01)

Coordinates

chr11:+:23909878..23913296

Molecular Weight (calculated)

52759.8 Da

IEP (calculated)

10.166

GRAVY (calculated)

-0.612

Length

484 amino acids

Sequence
(BLAST)

001: MADHQPAASS PKRKKKHSKK PEDSNATVDD SLAAAASPSP KKKEKHSKKK REAIDATMAA ASPKKKEKKH SKKQEDTNVP EKKREVVHVT VDASLTGAAA
101: AGAAPVVAYF PTGYDPLAAG GGRKGREAPR TRLFRHTKHP SRIELVVGAA TGGGGGPDFV GRSYAGEAVL PQLTGYALGV LDKASGTLKV VPIAANKKLA
201: HSQHSGAVGE AVSSAGDADL KVQDITKAFG TQKDKAKDIK WQSLNEQRND PSAFMDLDLG NADTSVGANE SQEPTVRNIP PYDPAADTSE RAYLFDEIIP
301: KSIRPHLVDI IGHFESGEIS SKGYGSFVSN RVNKLQELQG EDKERLAWIL SYITHLLSLL ARNSSMSKRH RKENQATSGP VIPQYVYRKM VLMFTEPGSS
401: ALSTEKHELL INYILVLTLY ADDFRSDPKD ICEDLKMTRQ MIKPYYDQLG CKSSSAGAFK SSVMTLPAPL KFPKEATRRK RRRF

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.