Factsheet for PGSC0003DMT400042035

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006250	Potato	cytosol	29.7	71.11
Solyc06g053330.2.1	Tomato	nucleus	89.56	62.16
VIT_09s0002g01860.t01	Wine grape	nucleus	56.38	57.72
KRH12306	Soybean	nucleus	47.33	48.11
CDY71531	Canola	cytosol, nucleus	26.68	44.92
GSMUA_AchrUn_...	Banana	nucleus	42.0	42.69
Bra021519.1-P	Field mustard	nucleus	40.84	41.12
CDY67555	Canola	nucleus	40.6	40.79
AT3G13940.1	Thale cress	nucleus	41.53	40.5
TraesCS4A01G151300.1	Wheat	nucleus	38.05	38.95
TraesCS4D01G154400.1	Wheat	nucleus, plastid	37.35	38.24
TraesCS4B01G158200.1	Wheat	nucleus	36.43	37.29
HORVU4Hr1G033420.3	Barley	nucleus	35.27	35.51
Os11t0615100-01	Rice	nucleus	36.66	32.64
Zm00001d048834_P001	Maize	nucleus	35.96	30.82
OQU83842	Sorghum	nucleus	34.57	30.04

Protein Annotations

EntrezGene:102603859	MapMan:15.2.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	UniProt:M1BCD9	PFAM:PF06870	EnsemblPlantsGene:PGSC0003DMG400016304	PGSC:PGSC0003DMG400016304	EnsemblPlants:PGSC0003DMT400042035
PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI000295DE0B	RefSeq:XP_006350715.1	SEG:seg	:

Description

DNA-directed RNA polymerase I 49 kDa polypeptide [Source:PGSC_GENE;Acc:PGSC0003DMG400016304]

Coordinates

chr6:-:39070851..39076482

Molecular Weight (calculated)

48921.3 Da

IEP (calculated)

8.667

GRAVY (calculated)

-0.641

Length

431 amino acids

Sequence
(BLAST)

001: MAKHKEKKNL EDQNPSEVEG KMGESTKKKT KKKKKETHTV TMETIAENPN NISPIVGYFP SGYDPLTNNN DGVEELSTKL YRNAKRNNRL QLVVSPNGSQ
101: VDFVGTNYSG EATSAQLCTY SLGILDKETQ TLKIVPIAAN KIIRLEPRVR GLEAQETEDP DTAKQELTAE ERNDKMRELT QKYSSKKTIR QARKLDSLRQ
201: QEDTGNQEEF DRNIAGAINK EALEVAVATD SARNIPPHDL DATIPQLAYP LDRIISKGEW DFLLDIFELT EAGAEMTPDL YPSFVCNRSY KLEHIQDEDE
301: KKRLAGIFSF ITHLVKFKDK HSMDGVSSAK HHKFPGILSQ KFTSMFSISD SKRLPEEKVT LLINYVLVLT LFADDFRSDP SDIAKDLRIN AVALRPFYEY
401: LGCKLVREKN VVLATLPVPL VFPSVRRKRR R

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.