Factsheet for GSMUA_AchrUn_randomP12530_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G154400.1	Wheat	nucleus, plastid	48.35	48.69
TraesCS4A01G151300.1	Wheat	nucleus	48.11	48.46
TraesCS4B01G158200.1	Wheat	nucleus	47.41	47.74
VIT_09s0002g01860.t01	Wine grape	nucleus	45.99	46.32
HORVU4Hr1G033420.3	Barley	nucleus	45.99	45.56
PGSC0003DMT400042035	Potato	nucleus	42.69	42.0
KRH12306	Soybean	nucleus	41.04	41.04
OQU83842	Sorghum	nucleus	47.88	40.93
Zm00001d048834_P001	Maize	nucleus	48.11	40.56
Os11t0615100-01	Rice	nucleus	45.99	40.29
PGSC0003DMT400006250	Potato	cytosol	16.51	38.89
CDY67555	Canola	nucleus	35.61	35.2
CDY71531	Canola	cytosol, nucleus	20.99	34.77
Bra021519.1-P	Field mustard	nucleus	34.91	34.58
AT3G13940.1	Thale cress	nucleus	35.14	33.71
Solyc06g053330.2.1	Tomato	nucleus	42.22	28.82

Protein Annotations

MapMan:15.2.5.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSMUA_AchrUn_randomG12530_001	EnsemblPlants:GSMUA_AchrUn_randomP12530_001	EnsemblPlants:GSMUA_AchrUn_randomT12530_001	UniProt:M0U8L2	PFAM:PF06870
PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI00029571C7	SEG:seg	:	:

Description

Putative A49-like RNA polymerase I associated factor family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12530_001]

Coordinates

chrchrUn_random:+:59958604..59964964

Molecular Weight (calculated)

48348.7 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.651

Length

424 amino acids

Sequence
(BLAST)

001: MAEATDGRSD TKKKKKKRNK RVSVEMEALS EAADRVAPVV GYFPSGYDPR GEGADPSIKV FRNKKRPNRL ELVVSPSGTG VDFVGKSYAG EAAGAQICSY
101: ALGVLDKESQ TLRIVPIASN KILRLEPRLK MNPFADTEVS DGLAEESIAT SKTERKMVDL TSLYGTKKDR DKDNKWRSLI QQRNDSSARE HLENINLNAD
201: GESQVLEDTL ETTTRNIPPY DASADTPEKA YLLDEIIPKG ERVHLLDILD DLHSGTDIPS KSYPSFVFNR MHKLREIQDE KEREKLACIF SYISHLQNFW
301: ERSRPSRHFK SASHDKSTDH LKIPRIVYQK LLRMFLDRES NVLSTEKNEL LIGHILVLTL FADCFQTDPS DIARDLKMTV QTLKPYYQQL GCKIFRESPS
401: APMFMILNAP LQFPEIRRTQ RRRK

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.