Factsheet for AT3G13940.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71531	Canola	cytosol, nucleus	34.39	59.38
CDY67555	Canola	nucleus	54.52	56.18
Bra021519.1-P	Field mustard	nucleus	53.17	54.91
VIT_09s0002g01860.t01	Wine grape	nucleus	42.99	45.13
KRH12306	Soybean	nucleus	42.31	44.1
PGSC0003DMT400042035	Potato	nucleus	40.5	41.53
PGSC0003DMT400006250	Potato	cytosol	15.61	38.33
GSMUA_AchrUn_...	Banana	nucleus	33.71	35.14
TraesCS4D01G154400.1	Wheat	nucleus, plastid	31.0	32.54
TraesCS4A01G151300.1	Wheat	nucleus	30.54	32.07
TraesCS4B01G158200.1	Wheat	nucleus	29.64	31.12
HORVU4Hr1G033420.3	Barley	nucleus	28.96	29.91
Solyc06g053330.2.1	Tomato	nucleus	40.95	29.15
Os11t0615100-01	Rice	nucleus	27.83	25.41
Zm00001d048834_P001	Maize	nucleus	27.38	24.06
OQU83842	Sorghum	nucleus	26.47	23.59

Protein Annotations

MapMan:15.2.5.2	EntrezGene:820607	ProteinID:AEE75443.1	EMBL:AF360204	ArrayExpress:AT3G13940	EnsemblPlantsGene:AT3G13940
RefSeq:AT3G13940	TAIR:AT3G13940	RefSeq:AT3G13940-TAIR-G	EnsemblPlants:AT3G13940.1	TAIR:AT3G13940.1	EMBL:AY040052
Unigene:At.25305	ProteinID:BAB02324.1	GO:GO:0001054	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351	GO:GO:0006360
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	RefSeq:NP_188010.1
PFAM:PF06870	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR14440	UniProt:Q9LVK6	InterPro:RNA_pol-assoc_fac_A49-like
UniParc:UPI000009CC77	SEG:seg	:	:	:	:

Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]

Coordinates

chr3:-:4600422..4602582

Molecular Weight (calculated)

50628.2 Da

IEP (calculated)

9.518

GRAVY (calculated)

-0.793

Length

442 amino acids

Sequence
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.