Factsheet for Zm00001d048834_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83842	Sorghum	nucleus	69.18	70.16
TraesCS4A01G151300.1	Wheat	nucleus	57.06	68.17
TraesCS4D01G154400.1	Wheat	nucleus, plastid	56.86	67.93
TraesCS4B01G158200.1	Wheat	nucleus	56.46	67.46
HORVU4Hr1G033420.3	Barley	nucleus	53.88	63.32
Os11t0615100-01	Rice	nucleus	55.47	57.64
GSMUA_AchrUn_...	Banana	nucleus	40.56	48.11
PGSC0003DMT400006250	Potato	cytosol	13.72	38.33
VIT_09s0002g01860.t01	Wine grape	nucleus	31.01	37.05
PGSC0003DMT400042035	Potato	nucleus	30.82	35.96
KRH12306	Soybean	nucleus	29.03	34.43
Bra021519.1-P	Field mustard	nucleus	24.65	28.97
CDY71531	Canola	cytosol, nucleus	14.71	28.91
CDY67555	Canola	nucleus	24.65	28.9
AT3G13940.1	Thale cress	nucleus	24.06	27.38
Solyc06g053330.2.1	Tomato	nucleus	31.61	25.6

Protein Annotations

MapMan:15.2.5.2	UniProt:A0A1D6PQB0	ProteinID:AQK48979.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	PFAM:PF06870	PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like	UniParc:UPI00084261E2
EnsemblPlantsGene:Zm00001d048834	EnsemblPlants:Zm00001d048834_P001	EnsemblPlants:Zm00001d048834_T001	SEG:seg	:	:

Description

DNA binding;DNA-directed RNA polymerases

Coordinates

chr4:-:6138916..6142254

Molecular Weight (calculated)

55872.6 Da

IEP (calculated)

9.479

GRAVY (calculated)

-0.532

Length

503 amino acids

Sequence
(BLAST)

001: MDSPVCSLSK TLEPSPMADL ETLATPAPAS ASTKKKKKHS KKHKAASDAP TNVTVDASLM GGSSYVAAAP VVGYFPSGYD PLTTAAGAES APGTQLFRHE
101: KHPTWVDLVV RSPGGGHDFV GRSYAGEAAV PQVCDYALGV LDKASGTLRI VPIAGKKILR LEPHLEVQHP AHSQHSEVAS EAASAAGNDE LKVQDLTMMY
201: GAKTDRDKLK TNSCKTIWNK RNESATIISP VCLCFLGNSV SKRRLQHSLQ FQKDNKWRSL KEQRNDPSAY EDIDLGISET NVNANDRQEP VLVRNIPPYD
301: PTADTSENAY LLDEIIPKSM REHLLEIVRH FESGEISSKG YGSFVSKRVH KLKELQGEDK KRFAWILSYI QHLLSLLARN GSMSNRKWKG RNENQISHGP
401: ATPQAVYRRL LFMFTEPGSS VMPTEKKELL TNYILVLTLF ADDFRSNPSD ICEDLKMTRQ NLKPYYDQLG CKSVTEGAFK STFMTLPAPL KFPKEVTRKR
501: RRQ

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.