Factsheet for HORVU4Hr1G033420.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G151300.1	Wheat	nucleus	87.85	89.31
TraesCS4B01G158200.1	Wheat	nucleus	85.98	87.41
TraesCS4D01G154400.1	Wheat	nucleus, plastid	85.51	86.94
Os11t0615100-01	Rice	nucleus	64.25	56.82
OQU83842	Sorghum	nucleus	63.55	54.84
Zm00001d048834_P001	Maize	nucleus	63.32	53.88
GSMUA_AchrUn_...	Banana	nucleus	45.56	45.99
VIT_09s0002g01860.t01	Wine grape	nucleus	36.68	37.29
KRH12306	Soybean	nucleus	35.51	35.85
PGSC0003DMT400042035	Potato	nucleus	35.51	35.27
PGSC0003DMT400006250	Potato	cytosol	14.02	33.33
AT3G13940.1	Thale cress	nucleus	29.91	28.96
CDY67555	Canola	nucleus	28.97	28.9
Bra021519.1-P	Field mustard	nucleus	28.74	28.74
CDY71531	Canola	cytosol, nucleus	16.59	27.73
Solyc06g053330.2.1	Tomato	nucleus	35.98	24.8

Protein Annotations

MapMan:15.2.5.2	UniProt:A0A287NRH4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:HORVU4Hr1G033420	EnsemblPlants:HORVU4Hr1G033420.3	PFAM:PF06870	PANTHER:PTHR14440	InterPro:RNA_pol-assoc_fac_A49-like
UniParc:UPI000B464330	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:233618937..233622231

Molecular Weight (calculated)

47452.5 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.440

Length

428 amino acids

Sequence
(BLAST)

001: MASHETLDLS PAASSKKKKK HSKKRKAIEV TVDASFPGAA APVVGYFPTG YDPLAAADPP RARLFRHEKH HNRVELVVDA PGGGPDFVGR SYAGEAAAPQ
101: LCGYALGVLD KATGTLKIVP IASNKILRLE PHFEVQQPAH SQQSAAEACS SVADTELNRQ DLTQAYGTKK DKDKDNKWKS LKEQRNDPSA YLDLDLGESK
201: TADATDSQAS MEVRNIPPYD PAADTSEKAY LFDEIIPKNI RPHLLDIVGH FESGEFGLKG YGSFVSNRVN KLHELQGEDQ ERLAWILSYI THLLSLLARN
301: SSMSKQKRKE KDQTIRGPMI PQAVHRKLLL MFTEPGSSSL STEKYELLIN YILVLTLFAD DFRSEPTDIC ADLKMNRQML KPYYDQLGCK SVSTGKVCIA
401: TVEAVCPQLS FTIVAWELLQ ERNHITDI

Best Arabidopsis Sequence Match ( AT3G13940.1 )
(BLAST)

001: MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK
101: KRIQVVVSPP GARVEFVGTN YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQETNEE EASGSAVVKE LEELKTGERD RYNTKKAVTR
201: DKKKRALYMG DDAATQKVLD GKLSELGVNT AALEGTSSTV ARNIPPYNTA ATTANEAYPL EKIIEKGDWS FLEDIYWLLQ QETEAATEAY PVFVRNRLYR
301: LRDIKDDMKK QTVCGAATLL THLVKFKDRN SMNGYDSAKD HKMPDIFRQK FNSMFKDSES DRIPVDKINL LISYVLVLSL HVDNFMTDPE DIAKDLRIST
401: VELRKHFLQL GCKFLKQNST TVATLPTPLN FPEVNRRRRA RK

Arabidopsis Description

DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.