Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G80745.1 | Thale cress | cytosol | 78.5 | 82.35 |
| Bra023568.1-P | Field mustard | cytosol | 63.55 | 70.1 |
| CDY55578 | Canola | cytosol | 71.96 | 66.96 |
| CDX85505 | Canola | cytosol | 69.16 | 64.35 |
| CDY64675 | Canola | cytosol | 69.16 | 64.35 |
| CDY38110 | Canola | cytosol | 68.22 | 62.39 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 49.53 | 39.55 |
| PGSC0003DMT400003969 | Potato | cytosol | 49.53 | 38.69 |
| KRH22122 | Soybean | cytosol | 47.66 | 37.78 |
| PGSC0003DMT400032421 | Potato | cytosol | 48.6 | 37.68 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 47.66 | 34.93 |
| GSMUA_Achr11P... | Banana | cytosol | 35.51 | 27.34 |
| EER95620 | Sorghum | nucleus | 31.78 | 24.46 |
| Zm00001d027399_P001 | Maize | nucleus | 31.78 | 24.46 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 31.78 | 24.11 |
| Zm00001d048492_P001 | Maize | nucleus | 31.78 | 24.11 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 31.78 | 23.61 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 31.78 | 23.45 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 28.97 | 22.96 |
| Os04t0530000-01 | Rice | cytosol | 30.84 | 22.92 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 29.91 | 15.61 |
| KXG26700 | Sorghum | plastid | 22.43 | 10.62 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 5.61 | 7.89 |
Protein Annotations
| MapMan:15.4.4.5 | EntrezGene:820781 | UniProt:A0A178VHK3 | ProteinID:AAF35408.1 | ProteinID:AEE75672.1 | EMBL:AK175945 |
| ArrayExpress:AT3G15420 | EnsemblPlantsGene:AT3G15420 | RefSeq:AT3G15420 | TAIR:AT3G15420 | RefSeq:AT3G15420-TAIR-G | EnsemblPlants:AT3G15420.1 |
| TAIR:AT3G15420.1 | ProteinID:BAB02371.1 | EMBL:BT010503 | GO:GO:0008150 | RefSeq:NP_188161.1 | ProteinID:OAP05336.1 |
| PFAM:PF10419 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR21860 | UniProt:Q9LDR3 | InterPro:TFIIIC_tau55-rel | UniParc:UPI00000A3B34 |
Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
Coordinates
chr3:-:5207575..5208509
Molecular Weight (calculated)
11970.3 Da
IEP (calculated)
4.341
GRAVY (calculated)
-0.255
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.