Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15420.1 | KRH25933 | AT1G63970.1 | 21798944 |
| AT3G15420.1 | KRH27891 | AT1G63970.1 | 21798944 |
| AT3G15420.1 | KRH12306 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 56.3 | 52.05 |
| AT1G80745.1 | Thale cress | cytosol | 39.26 | 51.96 |
| Bra023568.1-P | Field mustard | cytosol | 36.3 | 50.52 |
| PGSC0003DMT400003969 | Potato | cytosol | 51.11 | 50.37 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 49.63 | 50.0 |
| PGSC0003DMT400032421 | Potato | cytosol | 51.11 | 50.0 |
| AT3G15420.1 | Thale cress | cytosol | 37.78 | 47.66 |
| CDY64675 | Canola | cytosol | 40.0 | 46.96 |
| CDX85505 | Canola | cytosol | 40.0 | 46.96 |
| CDY38110 | Canola | cytosol | 40.0 | 46.15 |
| CDY55578 | Canola | cytosol | 37.78 | 44.35 |
| GSMUA_Achr11P... | Banana | cytosol | 42.22 | 41.01 |
| Zm00001d027399_P001 | Maize | nucleus | 37.04 | 35.97 |
| EER95620 | Sorghum | nucleus | 35.56 | 34.53 |
| Os04t0530000-01 | Rice | cytosol | 35.56 | 33.33 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 35.56 | 33.33 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 34.81 | 33.33 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 33.33 | 33.33 |
| Zm00001d048492_P001 | Maize | nucleus | 34.81 | 33.33 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 34.81 | 32.41 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 31.85 | 20.98 |
| KXG26700 | Sorghum | plastid | 27.41 | 16.37 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 6.67 | 11.84 |
Protein Annotations
| EMBL:ACUP02008380 | EnsemblPlants:KRH22122 | EnsemblPlantsGene:GLYMA_13G278900 | EntrezGene:100782116 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 |
| PFAM:PF10419 | ProteinID:KRH22122 | ProteinID:KRH22122.1 | ProteinID:KRH22123.1 | ProteinID:KRH22124.1 | UniParc:UPI0003DEBEA3 |
| UniProt:A0A0R0GV74 | MapMan:15.4.4.5 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:37997996..38001564
Molecular Weight (calculated)
14824.4 Da
IEP (calculated)
4.171
GRAVY (calculated)
-0.241
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MEANAASHDH EDQDEYVLLN LDGVSDLIDI PPNAKYVLTG LDTLNPVLII DDKFKLIGEY EETIGTCIAF TEQEAAVVHE ETGPSEVNIF SGTRLIDSSQ
101: APTTQVKPVC QLHKVLKFKL SPDSEIQNVT AKEAK
101: APTTQVKPVC QLHKVLKFKL SPDSEIQNVT AKEAK
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.