Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 53.17 | 80.74 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 49.76 | 70.83 |
| Zm00001d027399_P001 | Maize | nucleus | 43.41 | 64.03 |
| EER95620 | Sorghum | nucleus | 43.41 | 64.03 |
| Os04t0530000-01 | Rice | cytosol | 44.88 | 63.89 |
| Zm00001d048492_P001 | Maize | nucleus | 42.44 | 61.7 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 22.44 | 60.53 |
| GSMUA_Achr11P... | Banana | cytosol | 27.8 | 41.01 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 24.88 | 34.93 |
| CDY38110 | Canola | cytosol | 18.54 | 32.48 |
| KXG26700 | Sorghum | plastid | 35.61 | 32.3 |
| CDY64675 | Canola | cytosol | 18.05 | 32.17 |
| CDX85505 | Canola | cytosol | 18.05 | 32.17 |
| PGSC0003DMT400003969 | Potato | cytosol | 21.46 | 32.12 |
| PGSC0003DMT400032421 | Potato | cytosol | 21.46 | 31.88 |
| KRH22122 | Soybean | cytosol | 20.98 | 31.85 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 20.49 | 31.34 |
| AT3G15420.1 | Thale cress | cytosol | 15.61 | 29.91 |
| Bra023568.1-P | Field mustard | cytosol | 13.66 | 28.87 |
| CDY55578 | Canola | cytosol | 16.1 | 28.7 |
| AT1G80745.1 | Thale cress | cytosol | 14.15 | 28.43 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G513600.1 | EnsemblPlantsGene:TraesCS3B01G513600 | InterPro:TFIIIC_tau55-rel | ncoils:Coil | PANTHER:PTHR21860 | PFAM:PF10419 |
| SEG:seg | MapMan:15.4.4.5 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:756671448..756678942
Molecular Weight (calculated)
22971.3 Da
IEP (calculated)
4.509
GRAVY (calculated)
-0.333
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTLSIQLIY TVGCCTLCCI HPLLLGSAGE VGQVSSAGFI LLLLCECTFL LEMATEHERD KQIGQEEEEE EEEEEYVLLE LDGCLHSNIQ PDAPYILSGL
101: DTPTPNLIVG RGVNMIGEYE ETVGTYYLFS ESDAPSKPVH DRTVPLKVNK DKLGSSCKEG PSKEVKHLAS VQKILKFQSI NEDHHEHRAY QHKDKEFSFD
201: PSNRM
101: DTPTPNLIVG RGVNMIGEYE ETVGTYYLFS ESDAPSKPVH DRTVPLKVNK DKLGSSCKEG PSKEVKHLAS VQKILKFQSI NEDHHEHRAY QHKDKEFSFD
201: PSNRM
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.