Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017608_P001 | |
| Zm00001d048834_P001 | |
| Zm00001d051458_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15420.1 | Zm00001d017608_P001 | AT1G63970.1 | 21798944 |
| AT3G15420.1 | Zm00001d051458_P002 | AT1G63970.1 | 21798944 |
| AT3G15420.1 | Zm00001d048834_P001 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048492_P001 | Maize | nucleus | 83.45 | 82.27 |
| Os04t0530000-01 | Rice | cytosol | 73.38 | 70.83 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 64.75 | 63.83 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 64.75 | 62.5 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 64.03 | 61.38 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 57.55 | 59.26 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 26.62 | 48.68 |
| GSMUA_Achr11P... | Banana | cytosol | 46.04 | 46.04 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 64.03 | 43.41 |
| KXG26700 | Sorghum | plastid | 62.59 | 38.5 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 40.29 | 38.36 |
| KRH22122 | Soybean | cytosol | 35.97 | 37.04 |
| CDY64675 | Canola | cytosol | 28.78 | 34.78 |
| CDX85505 | Canola | cytosol | 28.78 | 34.78 |
| CDY38110 | Canola | cytosol | 28.78 | 34.19 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 32.37 | 33.58 |
| Bra023568.1-P | Field mustard | cytosol | 23.02 | 32.99 |
| PGSC0003DMT400003969 | Potato | cytosol | 31.65 | 32.12 |
| PGSC0003DMT400032421 | Potato | cytosol | 31.65 | 31.88 |
| AT3G15420.1 | Thale cress | cytosol | 24.46 | 31.78 |
| CDY55578 | Canola | cytosol | 25.9 | 31.3 |
| AT1G80745.1 | Thale cress | cytosol | 22.3 | 30.39 |
Protein Annotations
| EMBL:EU970762 | EnsemblPlants:Zm00001d027399_P001 | EnsemblPlants:Zm00001d027399_T001 | EnsemblPlantsGene:Zm00001d027399 | EntrezGene:100274636 | InterPro:TFIIIC_tau55-rel |
| ncoils:Coil | PANTHER:PTHR21860 | PFAM:PF10419 | ProteinID:ONL93041.1 | ProteinID:ONL93042.1 | SEG:seg |
| UniParc:UPI000182EC24 | UniProt:B6U0J7 | MapMan:15.4.4.5 | : | : | : |
Description
Transcription factor TFIIIC tau55-related protein
Coordinates
chr1:+:4402312..4404440
Molecular Weight (calculated)
15687.2 Da
IEP (calculated)
4.176
GRAVY (calculated)
-0.714
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEALEKDKE IDEEEEEYVL LELDNCLYSD MSPGAPFVLS GLDTLTPTLI IGDSLKMIGE YEETIGTCYL FSETEAEPKP TSNEMAPSEE NTDKQVSSSK
101: EAPSKEVNHL ASVQKILKFR PINAEHSQHR AYQHKDKEF
101: EAPSKEVNHL ASVQKILKFR PINAEHSQHR AYQHKDKEF
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.