Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006250 | |
| PGSC0003DMT400031768 | |
| PGSC0003DMT400042035 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15420.1 | PGSC0003DMT400031768 | AT1G63970.1 | 21798944 |
| AT3G15420.1 | PGSC0003DMT400006250 | AT3G13940.1 | 21798944 |
| AT3G15420.1 | PGSC0003DMT400042035 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003969 | Potato | cytosol | 94.2 | 94.89 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 90.58 | 93.28 |
| Bra023568.1-P | Field mustard | cytosol | 38.41 | 54.64 |
| CDX85505 | Canola | cytosol | 44.93 | 53.91 |
| CDY64675 | Canola | cytosol | 44.93 | 53.91 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 55.8 | 52.74 |
| CDY55578 | Canola | cytosol | 43.48 | 52.17 |
| CDY38110 | Canola | cytosol | 44.2 | 52.14 |
| KRH22122 | Soybean | cytosol | 50.0 | 51.11 |
| AT1G80745.1 | Thale cress | cytosol | 37.68 | 50.98 |
| AT3G15420.1 | Thale cress | cytosol | 37.68 | 48.6 |
| GSMUA_Achr11P... | Banana | cytosol | 40.58 | 40.29 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 36.23 | 35.46 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 36.96 | 35.42 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 35.51 | 33.79 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 32.61 | 33.33 |
| Os04t0530000-01 | Rice | cytosol | 34.78 | 33.33 |
| EER95620 | Sorghum | nucleus | 33.33 | 33.09 |
| Zm00001d027399_P001 | Maize | nucleus | 31.88 | 31.65 |
| Zm00001d048492_P001 | Maize | nucleus | 31.16 | 30.5 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 31.88 | 21.46 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 9.42 | 17.11 |
| KXG26700 | Sorghum | plastid | 25.36 | 15.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032421 | EnsemblPlantsGene:PGSC0003DMG400012454 | EntrezGene:102585379 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 |
| PGSC:PGSC0003DMG400012454 | RefSeq:XP_015164618.1 | UniParc:UPI00029650A9 | UniProt:M1AXE9 | MapMan:15.4.4.5 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012454]
Coordinates
chr7:-:53333410..53335170
Molecular Weight (calculated)
15595.5 Da
IEP (calculated)
4.060
GRAVY (calculated)
-0.562
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MMENQSLCDD NMEEAEYILL DLDDLPCEIY IPPNAPYVLS GLDTLNPILT IDGKIKLIGQ YDETIGTCLV FYESDTPPVV HEEAGPSEAN LCPGRRTLDP
101: KQTKSKQVKP VTQLQNILKF RLLENNETED AREKPKED
101: KQTKSKQVKP VTQLQNILKF RLLENNETED AREKPKED
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.