Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G15420.1 | Thale cress | cytosol | 82.35 | 78.5 |
| Bra023568.1-P | Field mustard | cytosol | 66.67 | 70.1 |
| CDY55578 | Canola | cytosol | 77.45 | 68.7 |
| CDX85505 | Canola | cytosol | 71.57 | 63.48 |
| CDY64675 | Canola | cytosol | 71.57 | 63.48 |
| CDY38110 | Canola | cytosol | 71.57 | 62.39 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 51.96 | 39.55 |
| KRH22122 | Soybean | cytosol | 51.96 | 39.26 |
| PGSC0003DMT400003969 | Potato | cytosol | 51.96 | 38.69 |
| PGSC0003DMT400032421 | Potato | cytosol | 50.98 | 37.68 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 48.04 | 33.56 |
| GSMUA_Achr11P... | Banana | cytosol | 39.22 | 28.78 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 32.35 | 23.4 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 32.35 | 22.92 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 32.35 | 22.76 |
| EER95620 | Sorghum | nucleus | 30.39 | 22.3 |
| Zm00001d027399_P001 | Maize | nucleus | 30.39 | 22.3 |
| Os04t0530000-01 | Rice | cytosol | 31.37 | 22.22 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 29.41 | 22.22 |
| Zm00001d048492_P001 | Maize | nucleus | 30.39 | 21.99 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 28.43 | 14.15 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 7.84 | 10.53 |
| KXG26700 | Sorghum | plastid | 21.57 | 9.73 |
Protein Annotations
| ArrayExpress:AT1G80745 | EMBL:DQ487474 | EnsemblPlants:AT1G80745.1 | EnsemblPlantsGene:AT1G80745 | EntrezGene:5007862 | Gene3D:3.30.200.170 |
| InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 | PO:PO:0000293 | ProteinID:AEE36443.1 | ProteinID:OAP17646.1 |
| RefSeq:AT1G80745 | RefSeq:AT1G80745-TAIR-G | RefSeq:NP_001319431.1 | TAIR:AT1G80745 | TAIR:AT1G80745.1 | UniParc:UPI0000D7C831 |
| UniProt:A0A178WHC1 | UniProt:Q1G3W0 | MapMan:15.4.4.5 | : | : | : |
Description
Transcription factor TFIIIC, tau55-related protein [Source:UniProtKB/TrEMBL;Acc:Q1G3W0]
Coordinates
chr1:+:30347426..30348482
Molecular Weight (calculated)
11220.5 Da
IEP (calculated)
4.642
GRAVY (calculated)
-0.266
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEHVMIDL DDVSRHIDIP ADAPYTLSGL DTLNPVLTID GKMKLVGEYI ATIGTCLAFS DKGDNQTPQK KTVEPVAKLH KILKFRLAPL DNEDGVTKTT
101: NL
101: NL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.