Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plasma membrane 1
- plastid 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra021519.1-P | |
| Bra027672.1-P | |
| Bra027770.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15420.1 | Bra027672.1-P | AT1G63970.1 | 21798944 |
| AT3G15420.1 | Bra027770.1-P | AT1G63970.1 | 21798944 |
| AT3G15420.1 | Bra021519.1-P | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85505 | Canola | cytosol | 92.78 | 78.26 |
| CDY64675 | Canola | cytosol | 92.78 | 78.26 |
| CDY38110 | Canola | cytosol | 88.66 | 73.5 |
| AT1G80745.1 | Thale cress | cytosol | 70.1 | 66.67 |
| AT3G15420.1 | Thale cress | cytosol | 70.1 | 63.55 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 53.61 | 38.81 |
| PGSC0003DMT400003969 | Potato | cytosol | 54.64 | 38.69 |
| PGSC0003DMT400032421 | Potato | cytosol | 54.64 | 38.41 |
| KRH22122 | Soybean | cytosol | 50.52 | 36.3 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 48.45 | 32.19 |
| GSMUA_Achr11P... | Banana | cytosol | 36.08 | 25.18 |
| EER95620 | Sorghum | nucleus | 32.99 | 23.02 |
| Zm00001d027399_P001 | Maize | nucleus | 32.99 | 23.02 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 32.99 | 22.7 |
| Zm00001d048492_P001 | Maize | nucleus | 32.99 | 22.7 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 32.99 | 22.22 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 30.93 | 22.22 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 32.99 | 22.07 |
| Os04t0530000-01 | Rice | cytosol | 31.96 | 21.53 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 28.87 | 13.66 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 10.31 | 13.16 |
| KXG26700 | Sorghum | plastid | 24.74 | 10.62 |
Protein Annotations
| EnsemblPlants:Bra023568.1 | EnsemblPlants:Bra023568.1-P | EnsemblPlantsGene:Bra023568 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 |
| UniParc:UPI0002543047 | UniProt:M4E465 | MapMan:15.4.4.5 | : | : | : |
Description
AT3G15420 (E=2e-038) | unknown protein
Coordinates
chrA02:+:3961124..3961704
Molecular Weight (calculated)
10611.7 Da
IEP (calculated)
4.653
GRAVY (calculated)
-0.247
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MDLDDVSRHI DIPPDAPYTL SGLDTLNPIL TIDGKIKLVG EYLETIGTCL AFSDKEVAPA ENGKPHKTVE PVAKIHKILK FRLALDNDDG ETRATTL
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.