Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027399_P001 | Maize | nucleus | 48.68 | 26.62 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 44.74 | 25.19 |
| EER95620 | Sorghum | nucleus | 46.05 | 25.18 |
| Zm00001d048492_P001 | Maize | nucleus | 44.74 | 24.11 |
| Os04t0530000-01 | Rice | cytosol | 43.42 | 22.92 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 60.53 | 22.44 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 38.16 | 20.0 |
| GSMUA_Achr11P... | Banana | cytosol | 25.0 | 13.67 |
| KXG26700 | Sorghum | plastid | 36.84 | 12.39 |
| Bra023568.1-P | Field mustard | cytosol | 13.16 | 10.31 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 17.11 | 9.7 |
| PGSC0003DMT400003969 | Potato | cytosol | 17.11 | 9.49 |
| PGSC0003DMT400032421 | Potato | cytosol | 17.11 | 9.42 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 15.79 | 8.22 |
| AT1G80745.1 | Thale cress | cytosol | 10.53 | 7.84 |
| CDY64675 | Canola | cytosol | 11.84 | 7.83 |
| CDX85505 | Canola | cytosol | 11.84 | 7.83 |
| CDY55578 | Canola | cytosol | 10.53 | 6.96 |
| CDY38110 | Canola | cytosol | 10.53 | 6.84 |
| KRH22122 | Soybean | cytosol | 11.84 | 6.67 |
| AT3G15420.1 | Thale cress | cytosol | 7.89 | 5.61 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G470900.1 | EnsemblPlantsGene:TraesCS3A01G470900 | MapMan:15.4.4.5 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:702576985..702577216
Molecular Weight (calculated)
8784.4 Da
IEP (calculated)
10.036
GRAVY (calculated)
-1.212
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MCFSDASPKP VHDHSAPPKV NKDKIGSTNK EGPSKEVKHL ARVQKIVKFR SINEDHHERA YQHKDKEFCF NPSNRM
001: MLIKRFNPPC WRSDHHQPKE SNRDKMGSSS SPSPNDAVLE SARPFLRGEL EKIDPKLPSL IAVLKSVGAG ECWHKHGSFL DHLIDIYKIL KLWKAPESVC
101: LCGLFHSAYS NSYVNLAIFD PSTGRDVVRD HVGEAAESLI HLFCVVPRQT LIHDELLFKY SDCELVEHLD CSEVSLRNAK EKGIFDGDEE WRKKINALVP
201: ENGVVVKHIK TGEEIVVSRR VVGVFLLMTM ADFSDQLFGF QDELFCNHDG RLEFRGNNVT ALWPGNGKPG LWMNSNSRMG AIYSLIVREE EILMEERRRA
301: FGSGFEVRKE RDEDIDLVVP PVFSFCTKVL DAKEQIEARE MYWEVVSSDT SKEGYLERAE ERLLGCIEKN PFVGEPHVLL SQVYLGKKRF KEAEREAEKG
401: LLLLLQWGSP WDKRMSWEGW IAWVRVLLMK SQDQSWPDVS WGILNLGLVR
101: LCGLFHSAYS NSYVNLAIFD PSTGRDVVRD HVGEAAESLI HLFCVVPRQT LIHDELLFKY SDCELVEHLD CSEVSLRNAK EKGIFDGDEE WRKKINALVP
201: ENGVVVKHIK TGEEIVVSRR VVGVFLLMTM ADFSDQLFGF QDELFCNHDG RLEFRGNNVT ALWPGNGKPG LWMNSNSRMG AIYSLIVREE EILMEERRRA
301: FGSGFEVRKE RDEDIDLVVP PVFSFCTKVL DAKEQIEARE MYWEVVSSDT SKEGYLERAE ERLLGCIEKN PFVGEPHVLL SQVYLGKKRF KEAEREAEKG
401: LLLLLQWGSP WDKRMSWEGW IAWVRVLLMK SQDQSWPDVS WGILNLGLVR
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9LHE6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.