Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15420.1 | OQU85630 | AT1G63970.1 | 21798944 |
| AT3G15420.1 | OQU83842 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048492_P001 | Maize | nucleus | 85.61 | 84.4 |
| Os04t0530000-01 | Rice | cytosol | 69.78 | 67.36 |
| TraesCS2D01G369300.1 | Wheat | cytosol | 62.59 | 61.7 |
| TraesCS2B01G390200.1 | Wheat | cytosol | 62.59 | 60.42 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 58.27 | 60.0 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 61.87 | 59.31 |
| TraesCS3A01G470900.1 | Wheat | peroxisome | 25.18 | 46.05 |
| GSMUA_Achr11P... | Banana | cytosol | 46.04 | 46.04 |
| TraesCS3B01G513600.1 | Wheat | extracellular, golgi, plasma membrane | 64.03 | 43.41 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 40.29 | 38.36 |
| KXG26700 | Sorghum | plastid | 60.43 | 37.17 |
| KRH22122 | Soybean | cytosol | 34.53 | 35.56 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 33.81 | 35.07 |
| CDX85505 | Canola | cytosol | 28.78 | 34.78 |
| CDY64675 | Canola | cytosol | 28.78 | 34.78 |
| PGSC0003DMT400003969 | Potato | cytosol | 33.81 | 34.31 |
| CDY38110 | Canola | cytosol | 28.78 | 34.19 |
| PGSC0003DMT400032421 | Potato | cytosol | 33.09 | 33.33 |
| Bra023568.1-P | Field mustard | cytosol | 23.02 | 32.99 |
| AT3G15420.1 | Thale cress | cytosol | 24.46 | 31.78 |
| CDY55578 | Canola | cytosol | 25.9 | 31.3 |
| AT1G80745.1 | Thale cress | cytosol | 22.3 | 30.39 |
Protein Annotations
| EnsemblPlants:EER95620 | EnsemblPlantsGene:SORBI_3001G529100 | EntrezGene:8085733 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 |
| ProteinID:EER95620 | ProteinID:EER95620.1 | RefSeq:XP_002468622.1 | SEG:seg | UniParc:UPI0001A83245 | UniProt:C5X0Y0 |
| MapMan:15.4.4.5 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:79297395..79298984
Molecular Weight (calculated)
15611.1 Da
IEP (calculated)
4.118
GRAVY (calculated)
-0.667
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEALEKDKE IGEEEEEYVL LELDNCLYSD ISPGAPFVLS GLDTLMPTLV VGDSLKMIGE YEETIGTCYL FSESETEPKP TSDEMTPSEE NTDKPASSSK
101: EAPSKEVNHL ASVQKILKFW PINAEHSQHR AYQHKDREV
101: EAPSKEVNHL ASVQKILKFW PINAEHSQHR AYQHKDREV
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.