CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	KXG32187	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00370.t01	Wine grape	cytosol	31.11	87.5
TraesCS6D01G239700.1	Wheat	plastid	84.44	86.76
TraesCS6A01G258500.1	Wheat	plastid	85.33	86.49
HORVU6Hr1G065960.1	Barley	plastid	84.0	82.53
GSMUA_Achr5P03350_001	Banana	plastid	76.0	74.35
GSMUA_Achr4P27230_001	Banana	plastid	75.11	71.91
Os02t0680600-01	Rice	plastid	86.22	70.55
CDX93899	Canola	mitochondrion	43.11	70.29
PGSC0003DMT400031768	Potato	plastid	68.44	68.44
CDY08344	Canola	plastid	68.89	67.39
Bra027672.1-P	Field mustard	plastid	68.89	66.52
CDY38210	Canola	plastid	68.89	66.52
CDY34390	Canola	plastid	68.44	65.81
Bra027770.1-P	Field mustard	plastid	68.0	65.67
AT1G63970.1	Thale cress	plastid	67.11	65.37
CDY25551	Canola	plastid	67.56	64.96
KRH27891	Soybean	nucleus, plastid	64.0	63.44
Solyc08g081570.2.1	Tomato	plastid	68.89	60.55
Zm00001d051458_P002	Maize	extracellular, mitochondrion	92.0	54.19
VIT_02s0025g00380.t01	Wine grape	plastid	39.11	52.38
KRH25933	Soybean	plastid	37.33	48.84

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	EntrezGene:8076034	MapMan:9.1.2.6	UniProt:A0A1Z5RPE9	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008685
GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016829	InterPro:IPR036571	InterPro:MECDP_synthase
InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	EnsemblPlants:OQU85630	ProteinID:OQU85630	ProteinID:OQU85630.1
PFAM:PF02542	ScanProsite:PS01350	PANTHER:PTHR43181	EnsemblPlantsGene:SORBI_3004G281900	SUPFAM:SSF69765	TIGRFAMs:TIGR00151
UniParc:UPI0001A85EE8	RefSeq:XP_002452756.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:62410887..62413555

Molecular Weight (calculated)

24014.1 Da

IEP (calculated)

8.140

GRAVY (calculated)

-0.003

Length

225 amino acids

Sequence
(BLAST)

001: MATAPNASSL FLVSSPISTA PRARAGSFPL SAQPSLRLRP RPFSAVAAAV QAEHQPAVAA TPKPPALPFR VGHGFDLHRL EPNLPLIIGG INIPHDRGCE
101: AHSDGDVLLH CVVDAILGAL GLPDIGQIFP DSDPRWKGAD SSVFMREAVK LMHEAGYELG NLDATLILQK PKISPFKETI RSNLCDLLGA DPSVVNLKAK
201: THEKVDSLGE NRSIAAHTVV LLMRK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.