Factsheet for GSMUA_Achr4P27230_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00370.t01	Wine grape	cytosol	31.06	91.25
HORVU0Hr1G023460.1	Barley	cytosol	28.94	87.18
GSMUA_Achr5P03350_001	Banana	plastid	78.72	80.43
TraesCS6D01G239700.1	Wheat	plastid	71.49	76.71
TraesCS6A01G258500.1	Wheat	plastid	71.49	75.68
OQU85630	Sorghum	plastid	71.91	75.11
Zm00001d017608_P001	Maize	plastid	71.06	74.22
HORVU6Hr1G065960.1	Barley	plastid	70.64	72.49
CDX93899	Canola	mitochondrion	42.55	72.46
PGSC0003DMT400031768	Potato	plastid	68.51	71.56
Bra027672.1-P	Field mustard	plastid	67.66	68.24
CDY08344	Canola	plastid	66.38	67.83
CDY38210	Canola	plastid	67.23	67.81
Bra027770.1-P	Field mustard	plastid	66.81	67.38
CDY34390	Canola	plastid	66.81	67.09
AT1G63970.1	Thale cress	plastid	65.53	66.67
CDY25551	Canola	plastid	65.96	66.24
KRH27891	Soybean	nucleus, plastid	62.98	65.2
Solyc08g081570.2.1	Tomato	plastid	68.94	63.28
Os02t0680600-01	Rice	plastid	74.04	63.27
VIT_02s0025g00380.t01	Wine grape	plastid	38.72	54.17
KRH25933	Soybean	plastid	36.6	50.0
Zm00001d051458_P002	Maize	extracellular, mitochondrion	71.91	44.24

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987
GO:GO:0016114	GO:GO:0016829	EnsemblPlantsGene:GSMUA_Achr4G27230_001	EnsemblPlants:GSMUA_Achr4P27230_001	EnsemblPlants:GSMUA_Achr4T27230_001	InterPro:IPR036571
UniProt:M0SSI5	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542
ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI0002964CF2	SEG:seg

Description

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G27230_001]

Coordinates

chr4:+:26152070..26154959

Molecular Weight (calculated)

25220.5 Da

IEP (calculated)

8.158

GRAVY (calculated)

-0.117

Length

235 amino acids

Sequence
(BLAST)

001: MASSLSVLWA SPGAPKSTRT PPPLSLPSAH AVPSFLRMQP RRPPSSLRPL TAAAALQVEQ QKAVEAESEP SRPPPSLPFR VGHGFDLHRL EPGLPLIIGG
101: IDIPHDRGCE AHSDGDVLLH CVVDAILGAL GLPDISQIFP DSDPKWKGAA SSVFVREAVR LMHEAGYELG NLDATLILQR PKLSPHKEAI RSNLCDLLGA
201: HPSVVNLKAK THEKVDSLGE NRSIAAHTVV LLIRK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.