Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g01100.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63970.1 | VIT_07s0005g01100.t01 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G023460.1 | Barley | cytosol | 85.0 | 87.18 |
| CDX93899 | Canola | mitochondrion | 81.25 | 47.1 |
| PGSC0003DMT400031768 | Potato | plastid | 88.75 | 31.56 |
| GSMUA_Achr5P03350_001 | Banana | plastid | 90.0 | 31.3 |
| AT1G63970.1 | Thale cress | plastid | 90.0 | 31.17 |
| OQU85630 | Sorghum | plastid | 87.5 | 31.11 |
| Zm00001d017608_P001 | Maize | plastid | 87.5 | 31.11 |
| TraesCS6A01G258500.1 | Wheat | plastid | 86.25 | 31.08 |
| GSMUA_Achr4P27230_001 | Banana | plastid | 91.25 | 31.06 |
| TraesCS6D01G239700.1 | Wheat | plastid | 85.0 | 31.05 |
| CDY38210 | Canola | plastid | 90.0 | 30.9 |
| Bra027672.1-P | Field mustard | plastid | 90.0 | 30.9 |
| CDY08344 | Canola | plastid | 88.75 | 30.87 |
| KRH27891 | Soybean | nucleus, plastid | 87.5 | 30.84 |
| CDY34390 | Canola | plastid | 90.0 | 30.77 |
| Bra027770.1-P | Field mustard | plastid | 88.75 | 30.47 |
| CDY25551 | Canola | plastid | 88.75 | 30.34 |
| HORVU6Hr1G065960.1 | Barley | plastid | 86.25 | 30.13 |
| Solyc08g081570.2.1 | Tomato | plastid | 88.75 | 27.73 |
| Os02t0680600-01 | Rice | plastid | 87.5 | 25.45 |
| Zm00001d051458_P002 | Maize | extracellular, mitochondrion | 86.25 | 18.06 |
| KRH25933 | Soybean | plastid | 7.5 | 3.49 |
| VIT_02s0025g00380.t01 | Wine grape | plastid | 3.75 | 1.79 |
Protein Annotations
| KEGG:00900+4.6.1.12 | Gene3D:3.30.1330.50 | MapMan:50.4.5 | ProteinID:CCB58198 | ProteinID:CCB58198.1 | UniProt:F6HUN2 |
| EMBL:FN596251 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008685 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016114 | InterPro:IPR036571 | InterPro:MECDP_synthase |
| InterPro:MECDP_synthase_sf | PFAM:PF02542 | PANTHER:PTHR43181 | SUPFAM:SSF69765 | UniParc:UPI00021085DB | ArrayExpress:VIT_02s0025g00370 |
| EnsemblPlantsGene:VIT_02s0025g00370 | EnsemblPlants:VIT_02s0025g00370.t01 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:479446..480379
Molecular Weight (calculated)
8867.9 Da
IEP (calculated)
9.890
GRAVY (calculated)
-0.186
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MELVRLMHEA GYEIGNLDAT LILQRPKLSP HKEAIRSNLS QLLGADPSVV NLKAKTHEKV DSLGENRSIA AHTVVLLMRK
001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K
Arabidopsis Description
ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.