Factsheet for HORVU6Hr1G065960.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G034750.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	HORVU3Hr1G034750.5	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G023460.1	Barley	cytosol	33.62	98.72
TraesCS6A01G258500.1	Wheat	plastid	92.58	95.5
TraesCS6D01G239700.1	Wheat	plastid	90.83	94.98
VIT_02s0025g00370.t01	Wine grape	cytosol	30.13	86.25
Zm00001d017608_P001	Maize	plastid	82.53	84.0
OQU85630	Sorghum	plastid	82.53	84.0
GSMUA_Achr5P03350_001	Banana	plastid	74.24	73.91
Os02t0680600-01	Rice	plastid	87.34	72.73
GSMUA_Achr4P27230_001	Banana	plastid	72.49	70.64
CDX93899	Canola	mitochondrion	41.48	68.84
PGSC0003DMT400031768	Potato	plastid	67.25	68.44
CDY08344	Canola	plastid	65.07	64.78
AT1G63970.1	Thale cress	plastid	65.07	64.5
CDY38210	Canola	plastid	65.5	64.38
Bra027770.1-P	Field mustard	plastid	65.07	63.95
Bra027672.1-P	Field mustard	plastid	65.07	63.95
CDY34390	Canola	plastid	64.63	63.25
KRH27891	Soybean	nucleus, plastid	62.01	62.56
CDY25551	Canola	plastid	63.76	62.39
Solyc08g081570.2.1	Tomato	plastid	68.12	60.94
VIT_02s0025g00380.t01	Wine grape	plastid	37.55	51.19
Zm00001d051458_P002	Maize	extracellular, mitochondrion	83.84	50.26
KRH25933	Soybean	plastid	37.12	49.42

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	UniProt:A0A287UH00	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008685	GO:GO:0009058
GO:GO:0009987	GO:GO:0016114	GO:GO:0016829	EnsemblPlantsGene:HORVU6Hr1G065960	EnsemblPlants:HORVU6Hr1G065960.1	InterPro:IPR036571
InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542	ScanProsite:PS01350
PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI000B46B8F4	SEG:seg	:

Description

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Source:UniProtKB/TrEMBL;Acc:A0A287UH00]

Coordinates

chrchr6H:+:455226206..455228523

Molecular Weight (calculated)

24506.9 Da

IEP (calculated)

9.091

GRAVY (calculated)

-0.016

Length

229 amino acids

Sequence
(BLAST)

001: MASASSLFLA SPISTAPRTG IRIRIRTRPT PSSACPARPS QRLRQPSLAV AAALQAEHQP AVAAAPKPPA LPFRVGHGFD LHRLEPGLPL IIGGISIPHD
101: RGCDAHSDGD VLLHCVVDAI LGALGLPDIG QIFPDTDPRW KGAESCVFMR EAVKLMHQAG YELGNLDATL ILQKPKISPF KETIRSNLCE LLGADPSVVN
201: LKAKTHEKVD SLGENRSIAA HTVVLLMRK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.