CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90948
CDX97257
CDY01921
CDY64806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	CDX90948	AT4G02150.1	21798944
AT1G63970.1	CDX97257	AT4G02150.1	21798944
AT1G63970.1	CDY01921	AT4G02150.1	21798944
AT1G63970.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00370.t01	Wine grape	cytosol	47.1	81.25
HORVU0Hr1G023460.1	Barley	cytosol	44.2	78.21
CDY38210	Canola	plastid	78.26	46.35
AT1G63970.1	Thale cress	plastid	77.54	46.32
CDY34390	Canola	plastid	78.26	46.15
CDY08344	Canola	plastid	76.81	46.09
CDY25551	Canola	plastid	77.54	45.73
PGSC0003DMT400031768	Potato	plastid	72.46	44.44
KRH27891	Soybean	nucleus, plastid	71.01	43.17
OQU85630	Sorghum	plastid	70.29	43.11
Zm00001d017608_P001	Maize	plastid	70.29	43.11
GSMUA_Achr5P03350_001	Banana	plastid	71.74	43.04
TraesCS6D01G239700.1	Wheat	plastid	68.12	42.92
TraesCS6A01G258500.1	Wheat	plastid	68.84	42.79
GSMUA_Achr4P27230_001	Banana	plastid	72.46	42.55
HORVU6Hr1G065960.1	Barley	plastid	68.84	41.48
Solyc08g081570.2.1	Tomato	plastid	72.46	39.06
Os02t0680600-01	Rice	plastid	71.74	36.0
Zm00001d051458_P002	Maize	extracellular, mitochondrion	70.29	25.39
VIT_02s0025g00380.t01	Wine grape	plastid	30.43	25.0
KRH25933	Soybean	plastid	28.99	23.26

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:50.4.5	GO:A0A078DZP7	EnsemblPlants:CDX93899	ProteinID:CDX93899
ProteinID:CDX93899.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	EnsemblPlantsGene:GSBRNA2T00156717001	InterPro:IPR036571
InterPro:MECDP_synthase	InterPro:MECDP_synthase_sf	PFAM:PF02542	PANTHER:PTHR43181	MetaCyc:PWY-7560	SUPFAM:SSF69765
UniPathway:UPA00056	UniParc:UPI0004EF1A1B	:	:	:	:

Description

BnaC04g20580D

Coordinates

chrLK031878:-:519994..521208

Molecular Weight (calculated)

15203.4 Da

IEP (calculated)

8.731

GRAVY (calculated)

-0.240

Length

138 amino acids

Sequence
(BLAST)

001: MIYNTMGLSL ARLHCLWHRL EPGYPLTIGG IDITHDRGCE AHSDGDVKWK RAASSVFIRE AGTLMDEAGY EIGNLDATLI LQRPKISPHK DTVRSNLSKL
101: LGADPSVVNL RAKTHENVKS LGENRSIAAD TVVLLMKK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.