Factsheet for Zm00001d051458_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008345_P003
Zm00001d040274_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	Zm00001d008345_P003	AT4G02150.1	21798944
AT1G63970.1	Zm00001d040274_P001	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85630	Sorghum	plastid	54.19	92.0
Zm00001d017608_P001	Maize	plastid	53.14	90.22
TraesCS6D01G239700.1	Wheat	plastid	50.26	87.67
TraesCS6A01G258500.1	Wheat	plastid	50.79	87.39
VIT_02s0025g00370.t01	Wine grape	cytosol	18.06	86.25
HORVU6Hr1G065960.1	Barley	plastid	50.26	83.84
GSMUA_Achr5P03350_001	Banana	plastid	45.29	75.22
Os02t0680600-01	Rice	plastid	53.14	73.82
GSMUA_Achr4P27230_001	Banana	plastid	44.24	71.91
CDX93899	Canola	mitochondrion	25.39	70.29
PGSC0003DMT400031768	Potato	plastid	40.84	69.33
CDY08344	Canola	plastid	40.84	67.83
CDY38210	Canola	plastid	41.1	67.38
Bra027672.1-P	Field mustard	plastid	40.58	66.52
Bra027770.1-P	Field mustard	plastid	40.58	66.52
CDY34390	Canola	plastid	40.31	65.81
AT1G63970.1	Thale cress	plastid	39.79	65.8
CDY25551	Canola	plastid	39.79	64.96
KRH27891	Soybean	nucleus, plastid	37.7	63.44
Solyc08g081570.2.1	Tomato	plastid	41.88	62.5
VIT_02s0025g00380.t01	Wine grape	plastid	22.77	51.79
KRH25933	Soybean	plastid	21.73	48.26

Protein Annotations

KEGG:00900+4.6.1.12	EntrezGene:100274468	EntrezGene:100284320	Gene3D:3.30.1330.50	MapMan:9.1.2.6	UniProt:A0A1D6Q704
ProteinID:AQK54271.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016829
InterPro:IPR036571	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542
ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI0008453A24	EnsemblPlantsGene:Zm00001d051458
EnsemblPlants:Zm00001d051458_P002	EnsemblPlants:Zm00001d051458_T002	SEG:seg	:	:	:

Description

methyl erythritol cyclodiphosphate synthase1 methyl erythritol cyclodiphosphate synthase1

Coordinates

chr4:-:159348371..159355580

Molecular Weight (calculated)

41178.6 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.122

Length

382 amino acids

Sequence
(BLAST)

001: MFDTVMPDFA GVYSFLGSVF DPSTSDHLQK LKEMNPIDVE TALLLMRNLS INLTSPDFED QRKLLSLYSA SDGPELGSSR SSALATSAPF IHRISSCRCS
101: LRLGANNSGT QKKNARISRF LFLLAQSRSP LHRASRKKAR PLRHLAHQAP ATSSGAMATA PYASSLFLAS SPISTAPRAS AGSFPPSAQP FSMRLRPRPS
201: PAVAAAVQAE HQPAVAATPK PPALPFRVGH GFDLHRLEPN LPLIIGGIDI PHDRGCEAHS DGDVLLHCVV DAILGALGLP DIGQIFPDSD PRWKGADSSV
301: FMREAVKLMH EAGYELGNLD ATLILQKPKI SPFKETIRLN LCNLLGADPS VVNLKAKTHE KVDSLGENRS IAAHTVVLLM RK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.