Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G390200.1 | Wheat | cytosol | 97.16 | 95.14 |
| TraesCS2A01G373100.1 | Wheat | cytosol | 96.45 | 93.79 |
| TraesCS3D01G466600.1 | Wheat | cytoskeleton, cytosol, nucleus | 67.38 | 70.37 |
| Os04t0530000-01 | Rice | cytosol | 69.5 | 68.06 |
| Zm00001d027399_P001 | Maize | nucleus | 63.83 | 64.75 |
| EER95620 | Sorghum | nucleus | 61.7 | 62.59 |
| Zm00001d048492_P001 | Maize | nucleus | 60.99 | 60.99 |
| GSMUA_Achr11P... | Banana | cytosol | 48.23 | 48.92 |
| VIT_19s0014g03060.t01 | Wine grape | cytosol | 41.84 | 40.41 |
| CDY38110 | Canola | cytosol | 30.5 | 36.75 |
| Solyc07g063290.2.1 | Tomato | cytosol, nucleus | 34.75 | 36.57 |
| PGSC0003DMT400003969 | Potato | cytosol | 35.46 | 36.5 |
| PGSC0003DMT400032421 | Potato | cytosol | 35.46 | 36.23 |
| CDY64675 | Canola | cytosol | 29.08 | 35.65 |
| CDX85505 | Canola | cytosol | 29.08 | 35.65 |
| KRH22122 | Soybean | cytosol | 33.33 | 34.81 |
| CDY55578 | Canola | cytosol | 27.66 | 33.91 |
| Bra023568.1-P | Field mustard | cytosol | 22.7 | 32.99 |
| AT1G80745.1 | Thale cress | cytosol | 23.4 | 32.35 |
| KXG26700 | Sorghum | plastid | 51.06 | 31.86 |
| AT3G15420.1 | Thale cress | cytosol | 24.11 | 31.78 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G369300.1 | EnsemblPlantsGene:TraesCS2D01G369300 | InterPro:TFIIIC_tau55-rel | PANTHER:PTHR21860 | PFAM:PF10419 | SEG:seg |
| MapMan:15.4.4.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:473585006..473587004
Molecular Weight (calculated)
16110.9 Da
IEP (calculated)
4.749
GRAVY (calculated)
-0.928
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEAEKDKQ IAEEEEEEEY VLLELDDVHY SCIQPNAPYI LSGLDTLTPT LVVGDGLKMI GEYEETVGTC YLFSESDAPP KPGHEELAPP KENKDKQGKN
101: IKEAPSKEVK HLTSVHKILK FRSTSEGRQE HRAYRYRDKE F
101: IKEAPSKEVK HLTSVHKILK FRSTSEGRQE HRAYRYRDKE F
001: MEEEFVMIDL DEVSRHIEIP SDAPYTLSGL DTLNPVLTID GKIKLVGEYI ETIGTCLAFS EKEEVSASEN QMPHKKIIEP VAKLHKILKF RLAALDNDDG
101: ETKTNNL
101: ETKTNNL
Arabidopsis Description
At3g15420 [Source:UniProtKB/TrEMBL;Acc:Q9LDR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.