Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36930.1 | CDX83878 | AT1G17970.1 | 21798944 |
| AT2G36930.1 | CDX96741 | AT1G17970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75003 | Canola | nucleus | 100.0 | 100.0 |
| Bra005232.1-P | Field mustard | nucleus | 99.15 | 99.15 |
| CDY46745 | Canola | nucleus | 95.76 | 95.76 |
| CDX79705 | Canola | nucleus | 94.92 | 94.92 |
| KRH19902 | Soybean | nucleus | 74.58 | 73.95 |
| Solyc09g008230.2.1 | Tomato | nucleus | 73.73 | 72.5 |
| KRH32511 | Soybean | nucleus | 72.88 | 72.27 |
| PGSC0003DMT400009848 | Potato | nucleus | 72.88 | 71.67 |
| VIT_08s0007g05070.t01 | Wine grape | nucleus | 72.88 | 71.67 |
| GSMUA_Achr1P06530_001 | Banana | nucleus | 69.49 | 66.13 |
| EES14048 | Sorghum | nucleus | 69.49 | 66.13 |
| Os08t0564500-01 | Rice | nucleus | 67.8 | 64.52 |
| HORVU0Hr1G007650.1 | Barley | nucleus | 66.1 | 62.9 |
| HORVU4Hr1G006520.1 | Barley | nucleus | 66.1 | 62.9 |
| TraesCS4A01G272700.1 | Wheat | nucleus | 64.41 | 61.29 |
| TraesCS4B01G041400.1 | Wheat | nucleus | 64.41 | 61.29 |
| TraesCS4D01G038700.1 | Wheat | nucleus | 64.41 | 61.29 |
| AT2G36930.1 | Thale cress | nucleus | 91.53 | 54.55 |
| Zm00001d031870_P001 | Maize | plastid | 35.59 | 44.68 |
| Zm00001d031868_P001 | Maize | nucleus | 43.22 | 37.5 |
Protein Annotations
| MapMan:17.1.2.2.2.3 | Gene3D:3.30.160.60 | GO:A0A078H703 | UniProt:A0A078H703 | EnsemblPlants:CDY33207 | ProteinID:CDY33207 |
| ProteinID:CDY33207.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00053942001 | InterPro:IPR013087 | InterPro:Matrin/U1-like-C_Znf_C2H2 | PFAM:PF12171 | ScanProsite:PS00028 | PANTHER:PTHR20863 |
| PANTHER:PTHR20863:SF54 | SMART:SM00451 | SUPFAM:SSF57667 | UniParc:UPI0001B36A8F | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
BnaC04g08320DBnaA05g07490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H703]
Coordinates
chrLK032308:-:364345..365354
Molecular Weight (calculated)
13516.5 Da
IEP (calculated)
10.114
GRAVY (calculated)
-0.916
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TETKPLELSE DLPGMGQFYC LHCDRYFCNV SVRDDHFKTK KHKKRVKLMN GPAPHSQLDA
101: DLAAGMGMPD NGPKLMAA
101: DLAAGMGMPD NGPKLMAA
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.