Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G038700.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS4B01G041400.1 | Wheat | nucleus | 100.0 | 100.0 |
| HORVU0Hr1G007650.1 | Barley | nucleus | 96.77 | 96.77 |
| HORVU4Hr1G006520.1 | Barley | nucleus | 96.77 | 96.77 |
| EES14048 | Sorghum | nucleus | 86.29 | 86.29 |
| Os08t0564500-01 | Rice | nucleus | 84.68 | 84.68 |
| KRH32511 | Soybean | nucleus | 67.74 | 70.59 |
| GSMUA_Achr1P06530_001 | Banana | nucleus | 70.16 | 70.16 |
| Solyc09g008230.2.1 | Tomato | nucleus | 67.74 | 70.0 |
| PGSC0003DMT400009848 | Potato | nucleus | 66.94 | 69.17 |
| KRH19902 | Soybean | nucleus | 63.71 | 66.39 |
| VIT_08s0007g05070.t01 | Wine grape | nucleus | 62.9 | 65.0 |
| Bra005232.1-P | Field mustard | nucleus | 61.29 | 64.41 |
| CDY46745 | Canola | nucleus | 61.29 | 64.41 |
| CDY33207 | Canola | nucleus | 61.29 | 64.41 |
| CDX75003 | Canola | nucleus | 61.29 | 64.41 |
| Bra023088.1-P | Field mustard | nucleus | 61.29 | 64.41 |
| CDX79705 | Canola | nucleus | 60.48 | 63.56 |
| Zm00001d031870_P001 | Maize | plastid | 39.52 | 52.13 |
| Zm00001d031868_P001 | Maize | nucleus | 54.03 | 49.26 |
| AT2G36930.1 | Thale cress | nucleus | 62.1 | 38.89 |
Protein Annotations
| MapMan:17.1.2.2.2.3 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000690 | InterPro:IPR013087 |
| InterPro:Matrin/U1-C_Znf_C2H2 | InterPro:Matrin/U1-like-C_Znf_C2H2 | PFAM:PF12171 | ScanProsite:PS00028 | PFscan:PS50171 | PANTHER:PTHR20863 |
| PANTHER:PTHR20863:SF54 | SMART:SM00451 | SUPFAM:SSF57667 | EnsemblPlantsGene:TraesCS4A01G272700 | EnsemblPlants:TraesCS4A01G272700.1 | InterPro:Znf_C2H2_jaz |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:583914291..583915891
Molecular Weight (calculated)
13958.9 Da
IEP (calculated)
9.697
GRAVY (calculated)
-0.881
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKCPHRKV KKRRLNCKQV RRGKFLVKAD DAVYDELVKL ADQGKDSEGK ALPVDEDLPG MGQFYCLHCD RYFADETVKE DHYRSKRHKK RVKQLSGPAP
101: HTQIDADLAG GMGMPDNGLK LMSS
101: HTQIDADLAG GMGMPDNGLK LMSS
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.