Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra016574.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36930.1 | Bra016574.1-P | AT1G17970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46745 | Canola | nucleus | 100.0 | 100.0 |
| CDX79705 | Canola | nucleus | 99.15 | 99.15 |
| Bra005232.1-P | Field mustard | nucleus | 94.92 | 94.92 |
| KRH19902 | Soybean | nucleus | 73.73 | 73.11 |
| Solyc09g008230.2.1 | Tomato | nucleus | 72.88 | 71.67 |
| KRH32511 | Soybean | nucleus | 72.03 | 71.43 |
| PGSC0003DMT400009848 | Potato | nucleus | 72.03 | 70.83 |
| VIT_08s0007g05070.t01 | Wine grape | nucleus | 71.19 | 70.0 |
| GSMUA_Achr1P06530_001 | Banana | nucleus | 69.49 | 66.13 |
| EES14048 | Sorghum | nucleus | 69.49 | 66.13 |
| Os08t0564500-01 | Rice | nucleus | 67.8 | 64.52 |
| HORVU0Hr1G007650.1 | Barley | nucleus | 66.1 | 62.9 |
| HORVU4Hr1G006520.1 | Barley | nucleus | 66.1 | 62.9 |
| TraesCS4A01G272700.1 | Wheat | nucleus | 64.41 | 61.29 |
| TraesCS4B01G041400.1 | Wheat | nucleus | 64.41 | 61.29 |
| TraesCS4D01G038700.1 | Wheat | nucleus | 64.41 | 61.29 |
| AT2G36930.1 | Thale cress | nucleus | 90.68 | 54.04 |
| Zm00001d031870_P001 | Maize | plastid | 35.59 | 44.68 |
| Zm00001d031868_P001 | Maize | nucleus | 43.22 | 37.5 |
Protein Annotations
| MapMan:17.1.2.2.2.3 | Gene3D:3.30.160.60 | EnsemblPlantsGene:Bra023088 | EnsemblPlants:Bra023088.1 | EnsemblPlants:Bra023088.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR013087 | UniProt:M4E2T7 |
| InterPro:Matrin/U1-like-C_Znf_C2H2 | PFAM:PF12171 | ScanProsite:PS00028 | PANTHER:PTHR20863 | PANTHER:PTHR20863:SF54 | SMART:SM00451 |
| SUPFAM:SSF57667 | UniParc:UPI000253FF82 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
AT2G36930 (E=3e-054) | zinc finger (C2H2 type) family protein
Coordinates
chrA03:-:8631227..8632202
Molecular Weight (calculated)
13513.4 Da
IEP (calculated)
10.336
GRAVY (calculated)
-0.985
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TETKPLELNE DLPGMGQFYC LHCDRYFSKA SVRDDHFKTK KHKKRVKIMN GPAPHSQLDA
101: DLAAGMGMPD NGPKLMAA
101: DLAAGMGMPD NGPKLMAA
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.