CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39137
KRH41763
KRH48568
KRH60461

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36930.1	KRH39137	AT1G17970.1	21798944
AT2G36930.1	KRH41763	AT1G17970.1	21798944
AT2G36930.1	KRH48568	AT1G17970.1	21798944
AT2G36930.1	KRH60461	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32511	Soybean	nucleus	93.28	93.28
VIT_08s0007g05070.t01	Wine grape	nucleus	81.51	80.83
PGSC0003DMT400009848	Potato	nucleus	80.67	80.0
Solyc09g008230.2.1	Tomato	nucleus	79.83	79.17
CDX75003	Canola	nucleus	73.95	74.58
CDY33207	Canola	nucleus	73.95	74.58
Bra005232.1-P	Field mustard	nucleus	73.11	73.73
Bra023088.1-P	Field mustard	nucleus	73.11	73.73
CDX79705	Canola	nucleus	73.11	73.73
CDY46745	Canola	nucleus	73.11	73.73
GSMUA_Achr1P06530_001	Banana	nucleus	73.95	70.97
Os08t0564500-01	Rice	nucleus	72.27	69.35
EES14048	Sorghum	nucleus	71.43	68.55
HORVU4Hr1G006520.1	Barley	nucleus	68.91	66.13
HORVU0Hr1G007650.1	Barley	nucleus	68.91	66.13
TraesCS4A01G272700.1	Wheat	nucleus	66.39	63.71
TraesCS4B01G041400.1	Wheat	nucleus	66.39	63.71
TraesCS4D01G038700.1	Wheat	nucleus	66.39	63.71
AT2G36930.1	Thale cress	nucleus	74.79	44.95
Zm00001d031870_P001	Maize	plastid	35.29	44.68
Zm00001d031868_P001	Maize	nucleus	45.38	39.71

Protein Annotations

EntrezGene:100499707	MapMan:17.1.2.2.2.3	Gene3D:3.30.160.60	EMBL:ACUP02008214	EMBL:BT089252	UniProt:C6SVQ9
EnsemblPlantsGene:GLYMA_13G142300	GO:GO:0000055	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0008270	GO:GO:0030687
GO:GO:0043023	GO:GO:0046872	InterPro:IPR013087	EnsemblPlants:KRH19902	ProteinID:KRH19902	ProteinID:KRH19902.1
InterPro:Matrin/U1-like-C_Znf_C2H2	PFAM:PF12171	ScanProsite:PS00028	PANTHER:PTHR20863	PANTHER:PTHR20863:SF54	SMART:SM00451
SUPFAM:SSF57667	UniParc:UPI0001B1582E	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:

Description

hypothetical protein

Coordinates

chr13:-:25503826..25505900

Molecular Weight (calculated)

13718.7 Da

IEP (calculated)

10.016

GRAVY (calculated)

-1.024

Length

119 amino acids

Sequence
(BLAST)

001: MGGKCPHRNV KKRRYSHKTA RRTKFELKGD DMVYAQLNKP DEERAPLPLD EDLPGMGQYY CLHCDRYFSN VAVRDEHFKT KRHKKRIKQM MGPAPHTQLD
101: ADVAAGMGMP DNGPKLMSM

Best Arabidopsis Sequence Match ( AT2G36930.1 )
(BLAST)

001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.