Factsheet for Os08t0564500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0550000-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36930.1	Os05t0550000-00	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14048	Sorghum	nucleus	91.13	91.13
HORVU4Hr1G006520.1	Barley	nucleus	85.48	85.48
HORVU0Hr1G007650.1	Barley	nucleus	85.48	85.48
TraesCS4D01G038700.1	Wheat	nucleus	84.68	84.68
TraesCS4B01G041400.1	Wheat	nucleus	84.68	84.68
TraesCS4A01G272700.1	Wheat	nucleus	84.68	84.68
GSMUA_Achr1P06530_001	Banana	nucleus	75.0	75.0
KRH32511	Soybean	nucleus	70.97	73.95
KRH19902	Soybean	nucleus	69.35	72.27
Solyc09g008230.2.1	Tomato	nucleus	68.55	70.83
PGSC0003DMT400009848	Potato	nucleus	67.74	70.0
VIT_08s0007g05070.t01	Wine grape	nucleus	66.94	69.17
CDY46745	Canola	nucleus	64.52	67.8
CDY33207	Canola	nucleus	64.52	67.8
CDX79705	Canola	nucleus	64.52	67.8
CDX75003	Canola	nucleus	64.52	67.8
Bra023088.1-P	Field mustard	nucleus	64.52	67.8
Bra005232.1-P	Field mustard	nucleus	63.71	66.95
Zm00001d031870_P001	Maize	plastid	43.55	57.45
Zm00001d031868_P001	Maize	nucleus	57.26	52.21
AT2G36930.1	Thale cress	nucleus	63.71	39.9

Protein Annotations

MapMan:17.1.2.2.2.3	Gene3D:3.30.160.60	EntrezGene:4346346	UniProt:A3BVU4	EMBL:AK242895	ProteinID:BAT06743.1
ProteinID:EAZ43683.1	GO:GO:0000055	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0008150	GO:GO:0008270
GO:GO:0030687	GO:GO:0043023	GO:GO:0046872	InterPro:IPR000690	InterPro:IPR013087	InterPro:Matrin/U1-C_Znf_C2H2
InterPro:Matrin/U1-like-C_Znf_C2H2	EnsemblPlantsGene:Os08g0564500	EnsemblPlants:Os08t0564500-01	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50171
PANTHER:PTHR20863	PANTHER:PTHR20863:SF54	SMART:SM00451	SUPFAM:SSF57667	UniParc:UPI00000045F7	RefSeq:XP_015648348.1
InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:	:	:

Description

Zinc finger, U1-type domain containing protein. (Os08t0564500-01)

Coordinates

chr8:-:28272340..28274465

Molecular Weight (calculated)

13943.9 Da

IEP (calculated)

9.886

GRAVY (calculated)

-0.795

Length

124 amino acids

Sequence
(BLAST)

001: MGGKCPHRKV KKRRLSHKTA RRGKFLVKAD DAVYDELVKL ADAGKDADAT QLPVDEDLPG MGQFYCLHCD RYFASESVKE EHYRSKRHKK RIKQMSGPAP
101: HTQLDAELAA GMGMPDNGLK LMSM

Best Arabidopsis Sequence Match ( AT2G36930.1 )
(BLAST)

001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.