Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d011636_P001 | |
| Zm00001d038909_P001 | |
| Zm00001d043784_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36930.1 | Zm00001d011636_P001 | AT1G17970.1 | 21798944 |
| AT2G36930.1 | Zm00001d038909_P001 | AT1G17970.1 | 21798944 |
| AT2G36930.1 | Zm00001d043784_P002 | AT1G17970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14048 | Sorghum | nucleus | 61.7 | 46.77 |
| Os08t0564500-01 | Rice | nucleus | 57.45 | 43.55 |
| TraesCS4D01G038700.1 | Wheat | nucleus | 52.13 | 39.52 |
| TraesCS4B01G041400.1 | Wheat | nucleus | 52.13 | 39.52 |
| TraesCS4A01G272700.1 | Wheat | nucleus | 52.13 | 39.52 |
| HORVU4Hr1G006520.1 | Barley | nucleus | 52.13 | 39.52 |
| HORVU0Hr1G007650.1 | Barley | nucleus | 52.13 | 39.52 |
| GSMUA_Achr1P06530_001 | Banana | nucleus | 51.06 | 38.71 |
| KRH32511 | Soybean | nucleus | 45.74 | 36.13 |
| Bra005232.1-P | Field mustard | nucleus | 44.68 | 35.59 |
| CDY46745 | Canola | nucleus | 44.68 | 35.59 |
| CDY33207 | Canola | nucleus | 44.68 | 35.59 |
| CDX75003 | Canola | nucleus | 44.68 | 35.59 |
| Bra023088.1-P | Field mustard | nucleus | 44.68 | 35.59 |
| KRH19902 | Soybean | nucleus | 44.68 | 35.29 |
| PGSC0003DMT400009848 | Potato | nucleus | 44.68 | 35.0 |
| Solyc09g008230.2.1 | Tomato | nucleus | 44.68 | 35.0 |
| VIT_08s0007g05070.t01 | Wine grape | nucleus | 44.68 | 35.0 |
| CDX79705 | Canola | nucleus | 43.62 | 34.75 |
| AT2G36930.1 | Thale cress | nucleus | 42.55 | 20.2 |
| Zm00001d031868_P001 | Maize | nucleus | 12.77 | 8.82 |
Protein Annotations
| EnsemblPlants:Zm00001d031870_P001 | EnsemblPlants:Zm00001d031870_T001 | EnsemblPlantsGene:Zm00001d031870 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 | InterPro:Znf_C2H2_sf | PANTHER:PTHR20863 | PANTHER:PTHR20863:SF54 |
| ProteinID:ONM03864.1 | SUPFAM:SSF57667 | UniParc:UPI0008431456 | UniProt:A0A1D6KLY7 | MapMan:17.1.2.2.2.3 | : |
Description
Zinc finger protein 593
Coordinates
chr1:+:204744332..204746298
Molecular Weight (calculated)
10534.7 Da
IEP (calculated)
10.539
GRAVY (calculated)
-0.505
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSWLTLSRTD GSHGGVTVPV WSRRCLVVAS QDIWLWAGNH RYFASESVKD DHYRSKRHKK RVKVMSGPAP HTQLDAELAA GMGKPDNGLK LMSM
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.