Factsheet for VIT_08s0007g05070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04080.t01
VIT_17s0000g03210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36930.1	VIT_01s0011g04080.t01	AT1G17970.1	21798944
AT2G36930.1	VIT_17s0000g03210.t01	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19902	Soybean	nucleus	80.83	81.51
KRH32511	Soybean	nucleus	80.83	81.51
Solyc09g008230.2.1	Tomato	nucleus	75.83	75.83
PGSC0003DMT400009848	Potato	nucleus	75.83	75.83
GSMUA_Achr1P06530_001	Banana	nucleus	76.67	74.19
CDX75003	Canola	nucleus	71.67	72.88
CDY33207	Canola	nucleus	71.67	72.88
Bra005232.1-P	Field mustard	nucleus	70.83	72.03
Bra023088.1-P	Field mustard	nucleus	70.0	71.19
CDX79705	Canola	nucleus	70.0	71.19
CDY46745	Canola	nucleus	70.0	71.19
EES14048	Sorghum	nucleus	70.83	68.55
Os08t0564500-01	Rice	nucleus	69.17	66.94
HORVU4Hr1G006520.1	Barley	nucleus	67.5	65.32
HORVU0Hr1G007650.1	Barley	nucleus	67.5	65.32
TraesCS4A01G272700.1	Wheat	nucleus	65.0	62.9
TraesCS4B01G041400.1	Wheat	nucleus	65.0	62.9
TraesCS4D01G038700.1	Wheat	nucleus	65.0	62.9
Zm00001d031870_P001	Maize	plastid	35.0	44.68
AT2G36930.1	Thale cress	nucleus	71.67	43.43
Zm00001d031868_P001	Maize	nucleus	44.17	38.97

Protein Annotations

EntrezGene:100262388	wikigene:100262388	MapMan:17.1.2.2.2.3	Gene3D:3.30.160.60	ProteinID:CBI30137	ProteinID:CBI30137.3
UniProt:D7TIR1	EMBL:FN595991	GO:GO:0000055	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0008270
GO:GO:0030687	GO:GO:0043023	GO:GO:0046872	InterPro:IPR013087	EntrezGene:LOC100262388	wikigene:LOC100262388
InterPro:Matrin/U1-like-C_Znf_C2H2	PFAM:PF12171	ScanProsite:PS00028	PANTHER:PTHR20863	PANTHER:PTHR20863:SF54	SMART:SM00451
SUPFAM:SSF57667	UniParc:UPI0001BE3728	ArrayExpress:VIT_08s0007g05070	EnsemblPlantsGene:VIT_08s0007g05070	EnsemblPlants:VIT_08s0007g05070.t01	RefSeq:XP_002270931
RefSeq:XP_002270931.1	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	:	:

Description

No Description!

Coordinates

chr8:-:18994527..18996862

Molecular Weight (calculated)

13709.9 Da

IEP (calculated)

10.476

GRAVY (calculated)

-0.775

Length

120 amino acids

Sequence
(BLAST)

001: MGGKCPSRKV KKRRYSHKTA RRDKFLLKDI LLSTFSILNK PEGEKKPLPV DEDLPGMGQY YCLHCDRYFA NVAVRDEHFK TKRHKKRLKQ MMGPAPHTQL
101: DADLAAGMGL PDNGPKLMSI

Best Arabidopsis Sequence Match ( AT2G36930.1 )
(BLAST)

001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.