Factsheet for AT2G36930.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75003	Canola	nucleus	54.55	91.53
CDY33207	Canola	nucleus	54.55	91.53
Bra023088.1-P	Field mustard	nucleus	54.04	90.68
CDY46745	Canola	nucleus	54.04	90.68
Bra005232.1-P	Field mustard	nucleus	54.04	90.68
CDX79705	Canola	nucleus	53.54	89.83
KRH19902	Soybean	nucleus	44.95	74.79
KRH32511	Soybean	nucleus	43.94	73.11
Solyc09g008230.2.1	Tomato	nucleus	43.94	72.5
PGSC0003DMT400009848	Potato	nucleus	43.43	71.67
VIT_08s0007g05070.t01	Wine grape	nucleus	43.43	71.67
GSMUA_Achr1P06530_001	Banana	nucleus	40.91	65.32
EES14048	Sorghum	nucleus	40.91	65.32
HORVU0Hr1G007650.1	Barley	nucleus	39.9	63.71
HORVU4Hr1G006520.1	Barley	nucleus	39.9	63.71
Os08t0564500-01	Rice	nucleus	39.9	63.71
TraesCS4A01G272700.1	Wheat	nucleus	38.89	62.1
TraesCS4B01G041400.1	Wheat	nucleus	38.89	62.1
TraesCS4D01G038700.1	Wheat	nucleus	38.89	62.1
Zm00001d031870_P001	Maize	plastid	20.2	42.55
Zm00001d031868_P001	Maize	nucleus	26.26	38.24

Protein Annotations

MapMan:17.1.2.2.2.3	Gene3D:3.30.160.60	EntrezGene:818267	ProteinID:AAD31578.2	ProteinID:AEC09323.1	ArrayExpress:AT2G36930
EnsemblPlantsGene:AT2G36930	RefSeq:AT2G36930	TAIR:AT2G36930	RefSeq:AT2G36930-TAIR-G	EnsemblPlants:AT2G36930.1	TAIR:AT2G36930.1
EMBL:AY045831	EMBL:AY091369	GO:GO:0000055	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0008270
GO:GO:0030687	GO:GO:0043023	GO:GO:0046872	InterPro:IPR013087	InterPro:Matrin/U1-like-C_Znf_C2H2	RefSeq:NP_565854.1
PFAM:PF12171	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR20863	PANTHER:PTHR20863:SF54
UniProt:Q9SJL4	SMART:SM00355	SMART:SM00451	SUPFAM:SSF57667	UniParc:UPI00000A1EDA	InterPro:Znf_C2H2_jaz
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]

Coordinates

chr2:-:15509898..15511607

Molecular Weight (calculated)

22630.6 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.868

Length

198 amino acids

Sequence
(BLAST)

001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.