Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g118840.2.1 | |
| Solyc05g008840.1.1 | |
| Solyc12g040390.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36930.1 | Solyc03g118840.2.1 | AT1G17970.1 | 21798944 |
| AT2G36930.1 | Solyc05g008840.1.1 | AT1G17970.1 | 21798944 |
| AT2G36930.1 | Solyc12g040390.1.1 | AT1G17970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009848 | Potato | nucleus | 97.5 | 97.5 |
| KRH32511 | Soybean | nucleus | 80.0 | 80.67 |
| KRH19902 | Soybean | nucleus | 79.17 | 79.83 |
| VIT_08s0007g05070.t01 | Wine grape | nucleus | 75.83 | 75.83 |
| Bra005232.1-P | Field mustard | nucleus | 72.5 | 73.73 |
| CDX75003 | Canola | nucleus | 72.5 | 73.73 |
| CDY33207 | Canola | nucleus | 72.5 | 73.73 |
| Bra023088.1-P | Field mustard | nucleus | 71.67 | 72.88 |
| CDY46745 | Canola | nucleus | 71.67 | 72.88 |
| CDX79705 | Canola | nucleus | 70.83 | 72.03 |
| EES14048 | Sorghum | nucleus | 71.67 | 69.35 |
| GSMUA_Achr1P06530_001 | Banana | nucleus | 70.83 | 68.55 |
| Os08t0564500-01 | Rice | nucleus | 70.83 | 68.55 |
| TraesCS4D01G038700.1 | Wheat | nucleus | 70.0 | 67.74 |
| TraesCS4A01G272700.1 | Wheat | nucleus | 70.0 | 67.74 |
| TraesCS4B01G041400.1 | Wheat | nucleus | 70.0 | 67.74 |
| HORVU4Hr1G006520.1 | Barley | nucleus | 68.33 | 66.13 |
| HORVU0Hr1G007650.1 | Barley | nucleus | 68.33 | 66.13 |
| Zm00001d031870_P001 | Maize | plastid | 35.0 | 44.68 |
| AT2G36930.1 | Thale cress | nucleus | 72.5 | 43.94 |
| Zm00001d031868_P001 | Maize | nucleus | 45.0 | 39.71 |
Protein Annotations
| MapMan:17.1.2.2.2.3 | Gene3D:3.30.160.60 | GO:GO:0000055 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008270 |
| GO:GO:0030687 | GO:GO:0043023 | GO:GO:0046872 | InterPro:IPR013087 | UniProt:K4CQL2 | InterPro:Matrin/U1-like-C_Znf_C2H2 |
| PFAM:PF12171 | ScanProsite:PS00028 | PANTHER:PTHR20863 | PANTHER:PTHR20863:SF54 | SMART:SM00451 | SUPFAM:SSF57667 |
| EnsemblPlantsGene:Solyc09g008230.2 | EnsemblPlants:Solyc09g008230.2.1 | UniParc:UPI000276BD00 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
Description
No Description!
Coordinates
chr9:+:1681078..1684790
Molecular Weight (calculated)
13996.1 Da
IEP (calculated)
10.130
GRAVY (calculated)
-0.980
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKCPHRSV KKRRYSHKQF RRAKFLVKGD DAVYDELLKP EEQRKELPVD EDLPGMGQYY CMHCDRYFAN VTVRDEHFKT KKHRKRVKIM MGPRPHTQLD
101: ADLAAGMGMP DNGPKLMSMS
101: ADLAAGMGMP DNGPKLMSMS
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.