Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G373200.1 | Wheat | nucleus | 61.54 | 64.18 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 60.16 | 63.29 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 60.44 | 63.22 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 61.81 | 59.84 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 60.71 | 57.55 |
| HORVU1Hr1G082970.1 | Barley | plastid | 55.22 | 53.32 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 45.6 | 49.7 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 43.96 | 47.06 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 45.6 | 43.68 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 37.09 | 37.5 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 37.64 | 36.93 |
| KRH48568 | Soybean | nucleus | 32.69 | 33.62 |
| PGSC0003DMT400078539 | Potato | plastid | 22.8 | 33.33 |
| KRH39137 | Soybean | nucleus | 33.24 | 32.79 |
| Solyc03g118840.2.1 | Tomato | nucleus | 34.62 | 32.56 |
| PGSC0003DMT400014732 | Potato | nucleus | 34.34 | 32.22 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 26.92 | 32.13 |
| KRH41763 | Soybean | nucleus | 33.24 | 32.1 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 30.77 | 31.91 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 28.57 | 30.68 |
| CDX68213 | Canola | nucleus, plastid | 28.57 | 29.8 |
| CDX83878 | Canola | nucleus | 29.12 | 29.69 |
| CDX73013 | Canola | plastid | 28.85 | 29.58 |
| CDY60141 | Canola | plastid | 28.85 | 29.41 |
| Bra015967.1-P | Field mustard | nucleus | 28.85 | 29.41 |
| CDY11092 | Canola | cytosol, plastid | 28.02 | 29.31 |
| Bra016574.1-P | Field mustard | nucleus | 28.57 | 29.05 |
| CDX96741 | Canola | nucleus | 28.85 | 28.85 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 28.3 | 28.07 |
| KRH60461 | Soybean | nucleus | 32.69 | 27.61 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 15.93 | 26.36 |
| AT1G17970.1 | Thale cress | nucleus | 25.55 | 25.27 |
| AT4G00070.1 | Thale cress | nucleus | 11.81 | 24.02 |
| Os03t0173900-01 | Rice | nucleus | 13.46 | 19.6 |
| Os08t0241400-00 | Rice | nucleus | 19.23 | 18.57 |
| Os04t0571200-01 | Rice | nucleus | 12.09 | 17.32 |
| Os06t0125800-01 | Rice | nucleus | 12.09 | 16.86 |
| AT1G36950.1 | Thale cress | cytosol | 10.44 | 16.81 |
| Os08t0548300-01 | Rice | nucleus | 13.74 | 16.39 |
| Os09t0535100-01 | Rice | nucleus | 14.56 | 16.31 |
| Os04t0603200-01 | Rice | nucleus | 14.29 | 15.81 |
| Os01t0667700-02 | Rice | nucleus | 20.88 | 14.5 |
| Os05t0163400-03 | Rice | nucleus | 21.15 | 14.45 |
| Os06t0695600-01 | Rice | nucleus | 22.53 | 14.16 |
| Os05t0564300-01 | Rice | nucleus | 19.23 | 14.0 |
| Os01t0159300-01 | Rice | nucleus | 18.13 | 13.17 |
| Os02t0150700-01 | Rice | extracellular | 23.08 | 13.1 |
| Os04t0648800-01 | Rice | nucleus | 20.05 | 10.94 |
| Os04t0185500-01 | Rice | nucleus | 20.6 | 10.58 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:4339524 | ProteinID:AAT39263.1 | ProteinID:BAS95205.1 | InterPro:IPR001841 |
| InterPro:IPR013083 | EnsemblPlantsGene:Os05g0550000 | EnsemblPlants:Os05t0550000-00 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF63 | UniProt:Q6L4H2 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000037806A | RefSeq:XP_015640323.1 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING finger protein OsRFPH2-20, RING-H2 protein 20Similar to protein binding protein. (Os05t0550000-00)
Coordinates
chr5:+:27317464..27320413
Molecular Weight (calculated)
39602.8 Da
IEP (calculated)
9.041
GRAVY (calculated)
-0.606
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRDGVGGD GGASAAEQQR RVALRVLLSR AEASSPPPAT VEEEAQRGRS GGGNKGLASA ALRGLGCTST AALRAHAPAS AVEVASSSER WHGRRRRRKV
101: QERRSARGGG GGGGGGVAPP GPAPAAAGDV WCTCAPGIPF AAEASSVDCV VVARHHHAHH TAAAMGSGRR GEAERRHRER PAAPRARRVT MREHISSSLM
201: DSPPFPDMPL LNADLLPPPP SGRHRHGYRH PHVGAAEEEI MMLRTRLLWG RFGMHDQHQD WRLDVDNMTY EELLDLEDRI GYVSTGLHDD EIARSLRMVK
301: YSAFNPKHFA TEVERNCSIC QEEFEANEET GRLICGHSYH VQCIKQWLSR KNTCPVCKTV VSKT
101: QERRSARGGG GGGGGGVAPP GPAPAAAGDV WCTCAPGIPF AAEASSVDCV VVARHHHAHH TAAAMGSGRR GEAERRHRER PAAPRARRVT MREHISSSLM
201: DSPPFPDMPL LNADLLPPPP SGRHRHGYRH PHVGAAEEEI MMLRTRLLWG RFGMHDQHQD WRLDVDNMTY EELLDLEDRI GYVSTGLHDD EIARSLRMVK
301: YSAFNPKHFA TEVERNCSIC QEEFEANEET GRLICGHSYH VQCIKQWLSR KNTCPVCKTV VSKT
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.