Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G36950.1 | Thale cress | cytosol | 52.51 | 41.59 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 22.91 | 20.5 |
| PGSC0003DMT400078539 | Potato | plastid | 20.67 | 14.86 |
| CDX83878 | Canola | nucleus | 29.61 | 14.85 |
| CDX96741 | Canola | nucleus | 30.17 | 14.84 |
| Bra016574.1-P | Field mustard | nucleus | 29.61 | 14.8 |
| AT1G17970.1 | Thale cress | nucleus | 30.17 | 14.67 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 23.46 | 13.77 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 27.93 | 13.62 |
| Zm00001d011636_P001 | Maize | nucleus | 25.7 | 13.61 |
| Zm00001d043784_P002 | Maize | nucleus | 26.26 | 13.58 |
| KRH48568 | Soybean | nucleus | 26.82 | 13.56 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 25.7 | 13.41 |
| TraesCS3A01G260500.1 | Wheat | nucleus | 25.7 | 13.33 |
| KRH39137 | Soybean | nucleus | 27.37 | 13.28 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 27.37 | 13.21 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 25.7 | 13.11 |
| OQU87370 | Sorghum | nucleus | 25.14 | 12.89 |
| KRH41763 | Soybean | nucleus | 26.82 | 12.73 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 24.58 | 12.72 |
| TraesCS1B01G393400.2 | Wheat | nucleus | 24.58 | 12.64 |
| AT5G52155.1 | Thale cress | nucleus | 12.85 | 12.64 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 23.46 | 12.57 |
| Solyc03g118840.2.1 | Tomato | nucleus | 26.82 | 12.4 |
| AT3G47180.1 | Thale cress | cytosol | 14.53 | 12.38 |
| TraesCS1A01G373200.1 | Wheat | nucleus | 24.02 | 12.32 |
| PGSC0003DMT400014732 | Potato | nucleus | 26.26 | 12.11 |
| Os05t0550000-00 | Rice | nucleus | 24.02 | 11.81 |
| HORVU3Hr1G064370.1 | Barley | plastid | 25.14 | 11.69 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 24.58 | 11.58 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 12.85 | 11.5 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 21.79 | 11.47 |
| HORVU1Hr1G082970.1 | Barley | plastid | 24.02 | 11.41 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 13.97 | 11.36 |
| KRH60461 | Soybean | nucleus | 26.82 | 11.14 |
| AT5G52140.1 | Thale cress | nucleus | 17.32 | 11.07 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 23.46 | 10.94 |
| EES18624 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 22.91 | 10.9 |
| AT3G63530.2 | Thale cress | cytosol | 15.08 | 10.89 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 21.79 | 10.83 |
| AT3G19910.1 | Thale cress | nucleus | 18.44 | 9.71 |
| AT1G53190.1 | Thale cress | nucleus | 21.23 | 7.69 |
| AT5G24870.2 | Thale cress | nucleus | 22.35 | 7.69 |
| AT3G15070.1 | Thale cress | nucleus | 20.67 | 7.61 |
| AT5G10650.2 | Thale cress | nucleus | 21.79 | 7.43 |
| AT4G31450.2 | Thale cress | nucleus | 19.55 | 7.04 |
| AT1G45180.3 | Thale cress | nucleus | 23.46 | 6.51 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 21.23 | 6.34 |
| AT4G34040.1 | Thale cress | nucleus | 23.46 | 6.31 |
| AT5G42940.1 | Thale cress | nucleus | 24.02 | 6.22 |
| AT2G15530.4 | Thale cress | nucleus | 24.58 | 5.64 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:828211 | ProteinID:AEE81820.1 | ArrayExpress:AT4G00070 | EnsemblPlantsGene:AT4G00070 |
| RefSeq:AT4G00070 | TAIR:AT4G00070 | RefSeq:AT4G00070-TAIR-G | EnsemblPlants:AT4G00070.1 | TAIR:AT4G00070.1 | UniProt:F4JH02 |
| GO:GO:0008150 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_191918.4 | PFAM:PF13639 | PO:PO:0000293 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF98 | SUPFAM:SSF57850 | UniParc:UPI0001A7B0F4 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JH02]
Coordinates
chr4:-:29072..31426
Molecular Weight (calculated)
20770.6 Da
IEP (calculated)
6.995
GRAVY (calculated)
-0.886
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLSEENEF LFDLNEIPEK TVYSDDGDEF LFDLNKIPPR EETVNSSDED FAVKSAEGYT DHLHRRNQAT KRKKKLRKRP KGLRMDTDPY QELRMDTDHM
101: TYEQLLQLCN NMGYENSGVK ASNIDRCLRN TKPSEFQSLA DKICCICQDG FQKRAGVGKL NCGHNFHVNC VKPWILTKK
101: TYEQLLQLCN NMGYENSGVK ASNIDRCLRN TKPSEFQSLA DKICCICQDG FQKRAGVGKL NCGHNFHVNC VKPWILTKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.