Factsheet for Bra016574.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96741	Canola	nucleus	99.16	97.53
CDX83878	Canola	nucleus	93.3	93.56
AT1G17970.1	Thale cress	nucleus	77.93	75.82
Bra015967.1-P	Field mustard	nucleus	55.87	56.02
Bra003830.1-P	Field mustard	nucleus, plastid	51.12	53.98
VIT_17s0000g03210.t01	Wine grape	nucleus	42.74	41.24
TraesCS3D01G260700.1	Wheat	nucleus	22.91	41.0
KRH41763	Soybean	nucleus	41.34	39.26
KRH39137	Soybean	nucleus	40.22	39.02
KRH48568	Soybean	nucleus	38.55	38.98
Solyc03g118840.2.1	Tomato	nucleus	39.94	36.95
PGSC0003DMT400078539	Potato	plastid	25.42	36.55
PGSC0003DMT400014732	Potato	nucleus	39.39	36.34
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	32.68	35.03
KRH60461	Soybean	nucleus	41.34	34.34
GSMUA_Achr9P21480_001	Banana	plastid	32.4	34.12
TraesCS3A01G260500.1	Wheat	nucleus	32.68	33.91
TraesCS3B01G293600.1	Wheat	nucleus	32.4	33.82
Solyc12g040390.1.1	Tomato	nucleus, plastid	28.21	33.11
Solyc05g008840.1.1	Tomato	nucleus, plastid	20.11	32.73
Zm00001d011636_P001	Maize	nucleus	30.45	32.25
Zm00001d043784_P002	Maize	nucleus	30.73	31.79
VIT_01s0011g04080.t01	Wine grape	nucleus	30.73	31.34
GSMUA_Achr3P29390_001	Banana	golgi, plastid	33.24	31.32
OQU87370	Sorghum	nucleus	30.45	31.23
TraesCS1D01G380000.2	Wheat	nucleus	30.17	31.21
TraesCS1B01G393400.2	Wheat	nucleus	29.89	30.75
TraesCS1A01G373200.1	Wheat	nucleus	29.61	30.37
HORVU3Hr1G064370.1	Barley	plastid	31.84	29.61
AT4G00070.1	Thale cress	nucleus	14.8	29.61
GSMUA_Achr1P23200_001	Banana	nucleus	29.05	28.89
Os05t0550000-00	Rice	nucleus	29.05	28.57
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	29.33	27.93
Zm00001d038909_P001	Maize	cytosol, mitochondrion	29.61	27.6
HORVU1Hr1G082970.1	Barley	plastid	27.93	26.53
Bra024009.1-P	Field mustard	nucleus	11.45	23.43
Bra019499.1-P	Field mustard	nucleus	10.06	21.95
AT1G36950.1	Thale cress	cytosol	13.41	21.24
Bra040450.1-P	Field mustard	nucleus	11.17	16.53
Bra022580.1-P	Field mustard	cytosol	8.1	16.11
Bra027467.1-P	Field mustard	nucleus	18.16	15.85
Bra006070.1-P	Field mustard	nucleus	21.79	15.76
Bra022579.1-P	Field mustard	cytosol	5.59	15.15
Bra009015.1-P	Field mustard	plastid	21.51	14.45
Bra027282.1-P	Field mustard	nucleus	17.04	13.71
Bra001582.1-P	Field mustard	nucleus	15.92	13.04
Bra039659.1-P	Field mustard	nucleus	16.2	12.61
Bra009800.1-P	Field mustard	nucleus	14.25	12.44
Bra023101.1-P	Field mustard	nucleus	18.16	12.2
Bra038109.1-P	Field mustard	nucleus	15.64	11.67
Bra039842.1-P	Field mustard	nucleus	19.27	11.56
Bra033652.1-P	Field mustard	nucleus	19.83	11.54
Bra022466.1-P	Field mustard	nucleus	10.34	11.42
Bra038240.1-P	Field mustard	nucleus	10.61	11.41
Bra015221.1-P	Field mustard	nucleus	18.99	11.39
Bra017205.1-P	Field mustard	nucleus	17.04	11.36
Bra024007.1-P	Field mustard	nucleus	14.8	11.35
Bra014043.1-P	Field mustard	nucleus	17.04	10.59
Bra028576.1-P	Field mustard	cytosol	7.82	9.89
Bra028293.1-P	Field mustard	nucleus	6.15	9.21
Bra036336.1-P	Field mustard	nucleus	4.75	3.38

Protein Annotations

EnsemblPlants:Bra016574.1	EnsemblPlants:Bra016574.1-P	EnsemblPlantsGene:Bra016574	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF98	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547107	UniProt:M4DJ96	MapMan:35.1

Description

AT1G17970 (E=6e-137) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA08:-:19119780..19121610

Molecular Weight (calculated)

40119.7 Da

IEP (calculated)

9.874

GRAVY (calculated)

-0.682

Length

358 amino acids

Sequence
(BLAST)

001: MSSTTIGEHI RLRRARHQTI RHSAADDDPP LTHVVPPISQ PTRFCNSAMS SFLLLPTKKK QLGFPQAASF RGMNCTAAAA AHEVSVPSAI RSSADWDKKK
101: KKRNKKKKKK KKGSYEDGSV RFLSEARDVD GSGGCVAVPD VWCGPGLGFS TDAVSVDPPR RNLPSSRRKI DVDKNSSNQT EGSSVLTRRF TNQESHSHAF
201: MGSDSTFMTS SHVEPTLLSS RYHGHLRRPY PDDLTEMMML RNGFVMGRTT DSLDHFHSLR LDVDNMSYEQ LLELGDRIGY VNTGLKESEI RRCLRKINPS
301: VSNTLADRKC SICQDEYERE CQVGKLECGH SFHVQCVKQW LSRKNACPVC KKTAYVKP

Best Arabidopsis Sequence Match ( AT1G17970.1 )
(BLAST)

001: MSSTTIGEHI RLRRARNQTI RHLHAADDDP PLSHVVLPIS QPNRFCNSAM SSFFPLPTSS SNESTRKKPY QTSSFRGMGC YAAAAAAAQE VSVPSVIRYS
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP

Arabidopsis Description

At1g17970/F2H15_16 [Source:UniProtKB/TrEMBL;Acc:Q944L9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.