CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41763	Soybean	nucleus	82.13	93.9
KRH48568	Soybean	nucleus	56.15	68.36
KRH39137	Soybean	nucleus	56.38	65.85
VIT_17s0000g03210.t01	Wine grape	nucleus	48.96	56.87
TraesCS3D01G260700.1	Wheat	nucleus	22.04	47.5
KRH05664	Soybean	nucleus	13.23	47.11
Solyc03g118840.2.1	Tomato	nucleus	41.76	46.51
PGSC0003DMT400014732	Potato	nucleus	41.53	46.13
AT1G73760.1	Thale cress	nucleus, plastid	38.05	44.69
Bra003830.1-P	Field mustard	nucleus, plastid	34.57	43.95
CDX73013	Canola	plastid	36.19	43.94
CDX68213	Canola	nucleus, plastid	35.27	43.55
CDY60141	Canola	plastid	35.73	43.14
Bra015967.1-P	Field mustard	nucleus	35.73	43.14
CDX83878	Canola	nucleus	35.03	42.3
Solyc12g040390.1.1	Tomato	nucleus, plastid	29.93	42.3
CDY11092	Canola	cytosol, plastid	34.11	42.24
TraesCS3A01G260500.1	Wheat	nucleus	33.64	42.03
CDX96741	Canola	nucleus	35.27	41.76
TraesCS3B01G293600.1	Wheat	nucleus	32.95	41.4
Bra016574.1-P	Field mustard	nucleus	34.34	41.34
VIT_01s0011g04080.t01	Wine grape	nucleus	32.71	40.17
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	30.16	38.92
HORVU3Hr1G064370.1	Barley	plastid	34.57	38.7
OQU87370	Sorghum	nucleus	31.32	38.68
Solyc05g008840.1.1	Tomato	nucleus, plastid	19.72	38.64
Zm00001d011636_P001	Maize	nucleus	30.16	38.46
AT1G17970.1	Thale cress	nucleus	32.71	38.32
GSMUA_Achr9P21480_001	Banana	plastid	29.93	37.94
Zm00001d043784_P002	Maize	nucleus	30.39	37.86
PGSC0003DMT400078539	Potato	plastid	21.11	36.55
GSMUA_Achr3P29390_001	Banana	golgi, plastid	30.86	35.0
GSMUA_Achr1P23200_001	Banana	nucleus	27.84	33.33
TraesCS1A01G373200.1	Wheat	nucleus	26.68	32.95
Os05t0550000-00	Rice	nucleus	27.61	32.69
TraesCS1B01G393400.2	Wheat	nucleus	25.99	32.18
TraesCS1D01G380000.2	Wheat	nucleus	25.75	32.08
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	25.99	29.79
Zm00001d038909_P001	Maize	cytosol, mitochondrion	25.99	29.17
HORVU1Hr1G082970.1	Barley	plastid	24.59	28.12
AT4G00070.1	Thale cress	nucleus	11.14	26.82
KRH53246	Soybean	nucleus	9.98	23.5
KRH17980	Soybean	nucleus	10.21	21.67
KRH16389	Soybean	nucleus	10.21	21.46
KRH64669	Soybean	nucleus	9.98	21.29
KRH29702	Soybean	nucleus	10.44	18.15
KRH24699	Soybean	nucleus	10.44	18.15
KRH52597	Soybean	nucleus	22.04	17.56
KRH04957	Soybean	nucleus	21.35	17.29
KRH27487	Soybean	cytosol, nucleus, plastid	9.51	16.6
AT1G36950.1	Thale cress	cytosol	8.58	16.37
KRH16134	Soybean	nucleus	20.42	15.86
KRH20832	Soybean	nucleus	8.82	15.38
KRH30071	Soybean	cytosol	12.06	15.12
KRH55165	Soybean	nucleus	10.9	15.11
KRH19845	Soybean	nucleus	19.26	15.09
KRG90628	Soybean	nucleus	11.6	14.93
KRH32434	Soybean	nucleus	18.1	14.47
KRG95955	Soybean	nucleus	18.33	14.39
KRH61936	Soybean	nucleus	18.56	14.36
KRH67668	Soybean	nucleus	18.1	14.16
KRH36126	Soybean	cytosol, mitochondrion, nucleus	11.37	13.8
KRH55161	Soybean	nucleus	14.15	13.32
KRH55090	Soybean	nucleus	11.14	12.9
KRH26195	Soybean	nucleus	13.46	12.66
KRH50319	Soybean	nucleus	20.65	12.45
KRH70661	Soybean	mitochondrion, nucleus	20.88	12.35
KRH61306	Soybean	nucleus	18.33	12.08
KRH52013	Soybean	nucleus	19.72	12.01
KRH61311	Soybean	nucleus	19.72	11.58
KRH22017	Soybean	nucleus	13.92	11.36
KRH04591	Soybean	nucleus	8.82	11.28
KRH04592	Soybean	nucleus	8.58	11.08
KRH05663	Soybean	cytosol	8.82	6.54

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003364	EnsemblPlantsGene:GLYMA_05G241900	UniProt:I1K5G8	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlants:KRH60461	ProteinID:KRH60461	ProteinID:KRH60461.1	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR22937	PANTHER:PTHR22937:SF96	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00023C4C70	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:41697530..41701571

Molecular Weight (calculated)

48599.1 Da

IEP (calculated)

9.380

GRAVY (calculated)

-0.713

Length

431 amino acids

Sequence
(BLAST)

001: MPTIAARQGR AHLTTPEEKG TPQIKIHYFK LINNHLKHIP YITPPSPILF SRVSLSLSET MPVTNTTTPT VAEHIKWRRP RNQFNHHHHH HHHPISETDP
101: NPQIPSIIQS TRCKSTISSL LLSTFSNNTS NNATAHSKKK SNFSASTFRG LGCTAGSSQQ VSVPAVIRSS ADWQGKKTRK KKHKRSNRSS KNKTFHGGVL
201: EGSNPGCVDF QDVWCGPGIG FSTDAAASVD CVVARKNVSS ARGKIDVDKI THRERSSYVG RRTETFTFLD STDPDIFTPR SASDTYGTAT YYRHVRDPSS
301: DGFAEIMMLQ GSLLMGGQLN SHDHFRDWRL DVDNMSYEQL LELGERIGHV NTGLKEDEMG RNIRKTRIQF WDDTSKLQVD KECSICQEEY EAGDELGRLN
401: CEHSYHFQCI KQWVAQKNFC PVCKQQVAAR H

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.