Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24699 | Soybean | nucleus | 96.37 | 96.37 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 68.55 | 67.46 |
| Solyc11g062260.1.1 | Tomato | nucleus | 58.47 | 58.94 |
| PGSC0003DMT400082375 | Potato | nucleus | 57.26 | 57.72 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 13.71 | 56.67 |
| KRH27487 | Soybean | cytosol, nucleus, plastid | 51.61 | 51.82 |
| Os03t0173900-01 | Rice | nucleus | 52.02 | 51.6 |
| KRH20832 | Soybean | nucleus | 51.21 | 51.42 |
| KXG40075 | Sorghum | cytosol | 50.4 | 50.2 |
| TraesCS4A01G112900.1 | Wheat | nucleus | 48.39 | 48.0 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 47.98 | 47.98 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 47.98 | 47.04 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 36.69 | 46.19 |
| Zm00001d048301_P001 | Maize | cytosol | 44.76 | 46.06 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 48.39 | 45.8 |
| Zm00001d027868_P004 | Maize | cytosol | 49.6 | 45.56 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 46.77 | 42.96 |
| KRH05664 | Soybean | nucleus | 16.94 | 34.71 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 48.79 | 34.38 |
| KRH53246 | Soybean | nucleus | 24.19 | 32.79 |
| KRH64669 | Soybean | nucleus | 25.0 | 30.69 |
| KRH17980 | Soybean | nucleus | 23.39 | 28.57 |
| KRH16389 | Soybean | nucleus | 22.58 | 27.32 |
| KRG90628 | Soybean | nucleus | 27.42 | 20.3 |
| KRH36126 | Soybean | cytosol, mitochondrion, nucleus | 25.0 | 17.46 |
| KRH48568 | Soybean | nucleus | 19.35 | 13.56 |
| KRH39137 | Soybean | nucleus | 18.95 | 12.74 |
| KRH55165 | Soybean | nucleus | 15.73 | 12.54 |
| KRH30071 | Soybean | cytosol | 16.94 | 12.21 |
| KRG95955 | Soybean | nucleus | 26.21 | 11.84 |
| KRH41763 | Soybean | nucleus | 17.74 | 11.67 |
| KRH67668 | Soybean | nucleus | 25.81 | 11.62 |
| KRH19845 | Soybean | nucleus | 24.19 | 10.91 |
| KRH32434 | Soybean | nucleus | 23.39 | 10.76 |
| KRH26195 | Soybean | nucleus | 19.76 | 10.7 |
| KRH04957 | Soybean | nucleus | 22.58 | 10.53 |
| KRH60461 | Soybean | nucleus | 18.15 | 10.44 |
| KRH55090 | Soybean | nucleus | 15.32 | 10.22 |
| KRH16134 | Soybean | nucleus | 22.58 | 10.09 |
| KRH55161 | Soybean | nucleus | 18.55 | 10.04 |
| KRH52597 | Soybean | nucleus | 20.97 | 9.61 |
| KRH04591 | Soybean | nucleus | 12.9 | 9.5 |
| KRH04592 | Soybean | nucleus | 12.5 | 9.28 |
| KRH22017 | Soybean | nucleus | 18.95 | 8.9 |
| KRH61306 | Soybean | nucleus | 21.37 | 8.1 |
| KRH61936 | Soybean | nucleus | 18.15 | 8.08 |
| KRH52013 | Soybean | nucleus | 21.77 | 7.63 |
| KRH61311 | Soybean | nucleus | 22.18 | 7.49 |
| KRH70661 | Soybean | mitochondrion, nucleus | 20.56 | 7.0 |
| KRH50319 | Soybean | nucleus | 20.16 | 6.99 |
| KRH05663 | Soybean | cytosol | 8.06 | 3.44 |
Protein Annotations
| EntrezGene:100793907 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02006816 | EnsemblPlantsGene:GLYMA_11G132700 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0043161 | GO:GO:0048437 | GO:GO:0061630 | UniProt:I1LJV4 | InterPro:IPR001841 |
| InterPro:IPR013083 | EnsemblPlants:KRH29702 | ProteinID:KRH29702 | ProteinID:KRH29702.1 | ProteinID:KRH29703.1 | ProteinID:KRH29704.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0001D83C61 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:10160457..10165565
Molecular Weight (calculated)
28794.1 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.864
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWNPHMEVH YNTISYPYNT AGSFIEYFEG LTYEHVNFIF SGASHAQESS YPSNSSFYKF GLSEPENNSY YRYSHGYEVN HHEPLVDEYR RPSENSLTIN
101: EQSPAVSTEW VEGGNTDTQD NSIECPRRHH SNSNDYQVIW QDNIDPDNMT YEELLELGEA VGTQSRGLTQ EQISSLPVSK YKCGFFLRKK SRDERCVICQ
201: MEYRRGDKRI TLPCKHVYHA SCGNKWLSIN KACPICYTEV FADKSKHK
101: EQSPAVSTEW VEGGNTDTQD NSIECPRRHH SNSNDYQVIW QDNIDPDNMT YEELLELGEA VGTQSRGLTQ EQISSLPVSK YKCGFFLRKK SRDERCVICQ
201: MEYRRGDKRI TLPCKHVYHA SCGNKWLSIN KACPICYTEV FADKSKHK
001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.