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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400082375 Potato nucleus 95.94 95.94
VIT_06s0004g01930.t01 Wine grape nucleus 63.41 61.9
KRH24699 Soybean nucleus 59.35 58.87
KRH29702 Soybean nucleus 58.94 58.47
GSMUA_Achr4P03550_001 Banana mitochondrion 13.41 55.0
Os03t0173900-01 Rice nucleus 52.03 51.2
KXG40075 Sorghum cytosol 50.0 49.4
TraesCS4A01G112900.1 Wheat nucleus 49.59 48.8
TraesCS4B01G191300.1 Wheat nucleus 50.0 46.95
GSMUA_Achr4P13930_001 Banana nucleus 47.15 46.77
GSMUA_Achr8P31290_001 Banana nucleus 46.75 45.45
Zm00001d048301_P001 Maize cytosol 44.31 45.23
Zm00001d027868_P004 Maize cytosol 48.78 44.44
TraesCS4D01G192500.2 Wheat cytosol, nucleus, vacuole 48.37 44.07
GSMUA_Achr4P03540_001 Banana nucleus 34.55 43.15
HORVU4Hr1G055690.5 Barley peroxisome, plastid 50.0 34.94
Solyc03g026150.2.1 Tomato nucleus 32.52 33.76
Solyc12g010500.1.1 Tomato nucleus 20.73 28.49
Solyc01g087060.2.1 Tomato nucleus 42.68 28.38
Solyc12g040390.1.1 Tomato nucleus, plastid 15.85 12.79
Solyc02g005480.2.1 Tomato nucleus 13.82 12.69
Solyc03g118840.2.1 Tomato nucleus 19.51 12.4
Solyc10g007140.2.1 Tomato nucleus 23.58 11.18
Solyc12g019190.1.1 Tomato mitochondrion 9.76 10.91
Solyc09g007620.1.1 Tomato nucleus 7.72 10.86
Solyc09g007530.2.1 Tomato nucleus 23.17 10.52
Solyc12g014070.1.1 Tomato nucleus 22.76 10.47
Solyc12g019200.1.1 Tomato mitochondrion 8.94 10.0
Solyc05g008840.1.1 Tomato nucleus, plastid 8.13 9.09
Solyc12g096420.1.1 Tomato nucleus 19.51 8.71
Solyc08g006460.2.1 Tomato nucleus 18.7 8.66
Solyc12g088740.1.1 Tomato nucleus 23.98 8.51
Solyc04g078680.2.1 Tomato nucleus 20.73 7.06
Solyc01g107930.2.1 Tomato nucleus 19.92 6.82
Solyc01g107940.2.1 Tomato nucleus 19.11 6.65
Solyc10g050170.1.1 Tomato mitochondrion, nucleus 19.51 6.61
Solyc07g062720.1.1 Tomato nucleus 19.92 6.32
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1GO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0006464
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0043161GO:GO:0048437
GO:GO:0061630InterPro:IPR001841InterPro:IPR013083UniProt:K4D937PFAM:PF13639PFscan:PS50089
PANTHER:PTHR14155PANTHER:PTHR14155:SF170SMART:SM00184SUPFAM:SSF57850EnsemblPlantsGene:Solyc11g062260.1EnsemblPlants:Solyc11g062260.1.1
UniParc:UPI0002769534InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHD:::
Description
No Description!
Coordinates
chr11:-:49155633..49161131
Molecular Weight (calculated)
28153.7 Da
IEP (calculated)
5.601
GRAVY (calculated)
-0.635
Length
246 amino acids
Sequence
(BLAST)
001: MNWNQQTEIY YTNGAMPYNS IGSFMDFFGG VTYDHVNYIF ADPPYAQESL YPSISTNPYK FGYSEAGSFS YYDYDREYVV NDHVSGIEEH DRHLENPSTT
101: TVNVAANVHR EEISGSNSLT NSVECPRGQI NTRDSEVVWQ DNIDPDNMTY EELLELGEAV GTQSRGLSQN QISLLPVTKF KCGFFSRKKS RKERCVICQM
201: EYKRKDQQVT LPCKHVYHAG CGSRWLSINK ACPICYTEVV INTSKR
Best Arabidopsis Sequence Match ( AT3G63530.1 )
(BLAST)
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.