Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400082375 | Potato | nucleus | 95.94 | 95.94 |
VIT_06s0004g01930.t01 | Wine grape | nucleus | 63.41 | 61.9 |
KRH24699 | Soybean | nucleus | 59.35 | 58.87 |
KRH29702 | Soybean | nucleus | 58.94 | 58.47 |
GSMUA_Achr4P03550_001 | Banana | mitochondrion | 13.41 | 55.0 |
Os03t0173900-01 | Rice | nucleus | 52.03 | 51.2 |
KXG40075 | Sorghum | cytosol | 50.0 | 49.4 |
TraesCS4A01G112900.1 | Wheat | nucleus | 49.59 | 48.8 |
TraesCS4B01G191300.1 | Wheat | nucleus | 50.0 | 46.95 |
GSMUA_Achr4P13930_001 | Banana | nucleus | 47.15 | 46.77 |
GSMUA_Achr8P31290_001 | Banana | nucleus | 46.75 | 45.45 |
Zm00001d048301_P001 | Maize | cytosol | 44.31 | 45.23 |
Zm00001d027868_P004 | Maize | cytosol | 48.78 | 44.44 |
TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 48.37 | 44.07 |
GSMUA_Achr4P03540_001 | Banana | nucleus | 34.55 | 43.15 |
HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 50.0 | 34.94 |
Solyc03g026150.2.1 | Tomato | nucleus | 32.52 | 33.76 |
Solyc12g010500.1.1 | Tomato | nucleus | 20.73 | 28.49 |
Solyc01g087060.2.1 | Tomato | nucleus | 42.68 | 28.38 |
Solyc12g040390.1.1 | Tomato | nucleus, plastid | 15.85 | 12.79 |
Solyc02g005480.2.1 | Tomato | nucleus | 13.82 | 12.69 |
Solyc03g118840.2.1 | Tomato | nucleus | 19.51 | 12.4 |
Solyc10g007140.2.1 | Tomato | nucleus | 23.58 | 11.18 |
Solyc12g019190.1.1 | Tomato | mitochondrion | 9.76 | 10.91 |
Solyc09g007620.1.1 | Tomato | nucleus | 7.72 | 10.86 |
Solyc09g007530.2.1 | Tomato | nucleus | 23.17 | 10.52 |
Solyc12g014070.1.1 | Tomato | nucleus | 22.76 | 10.47 |
Solyc12g019200.1.1 | Tomato | mitochondrion | 8.94 | 10.0 |
Solyc05g008840.1.1 | Tomato | nucleus, plastid | 8.13 | 9.09 |
Solyc12g096420.1.1 | Tomato | nucleus | 19.51 | 8.71 |
Solyc08g006460.2.1 | Tomato | nucleus | 18.7 | 8.66 |
Solyc12g088740.1.1 | Tomato | nucleus | 23.98 | 8.51 |
Solyc04g078680.2.1 | Tomato | nucleus | 20.73 | 7.06 |
Solyc01g107930.2.1 | Tomato | nucleus | 19.92 | 6.82 |
Solyc01g107940.2.1 | Tomato | nucleus | 19.11 | 6.65 |
Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 19.51 | 6.61 |
Solyc07g062720.1.1 | Tomato | nucleus | 19.92 | 6.32 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009908 |
GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0048437 |
GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K4D937 | PFAM:PF13639 | PFscan:PS50089 |
PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | SMART:SM00184 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g062260.1 | EnsemblPlants:Solyc11g062260.1.1 |
UniParc:UPI0002769534 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
No Description!
Coordinates
chr11:-:49155633..49161131
Molecular Weight (calculated)
28153.7 Da
IEP (calculated)
5.601
GRAVY (calculated)
-0.635
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MNWNQQTEIY YTNGAMPYNS IGSFMDFFGG VTYDHVNYIF ADPPYAQESL YPSISTNPYK FGYSEAGSFS YYDYDREYVV NDHVSGIEEH DRHLENPSTT
101: TVNVAANVHR EEISGSNSLT NSVECPRGQI NTRDSEVVWQ DNIDPDNMTY EELLELGEAV GTQSRGLSQN QISLLPVTKF KCGFFSRKKS RKERCVICQM
201: EYKRKDQQVT LPCKHVYHAG CGSRWLSINK ACPICYTEVV INTSKR
101: TVNVAANVHR EEISGSNSLT NSVECPRGQI NTRDSEVVWQ DNIDPDNMTY EELLELGEAV GTQSRGLSQN QISLLPVTKF KCGFFSRKKS RKERCVICQM
201: EYKRKDQQVT LPCKHVYHAG CGSRWLSINK ACPICYTEVV INTSKR
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.