Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G112900.1 | Wheat | nucleus | 68.47 | 96.4 |
| TraesCS4B01G191300.1 | Wheat | nucleus | 68.18 | 91.6 |
| Os03t0173900-01 | Rice | nucleus | 62.78 | 88.4 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 65.06 | 84.81 |
| KXG40075 | Sorghum | cytosol | 58.81 | 83.13 |
| Zm00001d027868_P004 | Maize | cytosol | 57.67 | 75.19 |
| Zm00001d048301_P001 | Maize | cytosol | 50.0 | 73.03 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 42.33 | 58.89 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 36.65 | 51.19 |
| PGSC0003DMT400082375 | Potato | nucleus | 34.94 | 50.0 |
| Solyc11g062260.1.1 | Tomato | nucleus | 34.94 | 50.0 |
| KRH24699 | Soybean | nucleus | 34.66 | 49.19 |
| KRH29702 | Soybean | nucleus | 34.38 | 48.79 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 16.76 | 34.3 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 24.72 | 32.83 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 19.32 | 28.57 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 20.74 | 24.41 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 23.3 | 23.7 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 4.83 | 18.48 |
| HORVU3Hr1G064370.1 | Barley | plastid | 14.49 | 13.25 |
| HORVU1Hr1G082970.1 | Barley | plastid | 12.78 | 11.94 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 11.65 | 10.93 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 15.91 | 10.65 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 14.49 | 9.81 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 13.07 | 8.57 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 14.2 | 8.49 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 13.35 | 8.02 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 13.07 | 7.96 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 14.49 | 7.8 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 14.2 | 7.08 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 13.35 | 6.76 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 1.42 | 1.17 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G055690.5 | EnsemblPlantsGene:HORVU4Hr1G055690 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF170 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B4856D5 | UniProt:A0A287P589 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr4H:-:467561717..467570241
Molecular Weight (calculated)
39373.7 Da
IEP (calculated)
6.564
GRAVY (calculated)
-0.440
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: PVPSFPLLSS LTPPKAALLH LSHRLPADLQ CTTACPAECL PHTSILPLPP LXPPLSPAPT PLTRDAAIAV PFLHRRHIAS LLPPPRPRSL VIEFEVDDPS
101: ERMNGSRQME LHYINTGYPY TITESFMDFF EGLTYAHADF ALADAFQDQA NPYWTMMQTN SYKYGYSGAG NYYSYGHVYD MNDYMHRADS GRRVWDNPMP
201: VNNTDSPNVV LQGGEAPHAS ASATTEDRIQ QPVHQNSSSP QVVWQDSIDP DNMTYEELLD LGEAVGTQSR GLSQESISAL PVTKFKCGFF SRKKKRRERC
301: VVCQMEYRRG DLQMALPCKH VYHASCVTKW LTINKVCPVC FAEVPGEEPK RQ
101: ERMNGSRQME LHYINTGYPY TITESFMDFF EGLTYAHADF ALADAFQDQA NPYWTMMQTN SYKYGYSGAG NYYSYGHVYD MNDYMHRADS GRRVWDNPMP
201: VNNTDSPNVV LQGGEAPHAS ASATTEDRIQ QPVHQNSSSP QVVWQDSIDP DNMTYEELLD LGEAVGTQSR GLSQESISAL PVTKFKCGFF SRKKKRRERC
301: VVCQMEYRRG DLQMALPCKH VYHASCVTKW LTINKVCPVC FAEVPGEEPK RQ
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.