Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G054700.2 | Wheat | nucleus | 92.86 | 87.7 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 92.44 | 87.65 |
| TraesCS4A01G441400.1 | Wheat | nucleus | 89.92 | 85.6 |
| KXG19166 | Sorghum | nucleus | 61.34 | 53.68 |
| Os06t0125800-01 | Rice | nucleus | 58.4 | 53.26 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 58.4 | 51.87 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 27.31 | 37.79 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 35.29 | 31.7 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 8.82 | 22.83 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 28.57 | 19.32 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 23.11 | 18.39 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 25.63 | 17.63 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 20.17 | 12.8 |
| HORVU3Hr1G064370.1 | Barley | plastid | 18.91 | 11.69 |
| HORVU1Hr1G082970.1 | Barley | plastid | 17.23 | 10.88 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 18.49 | 8.37 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 20.17 | 8.19 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 18.07 | 8.01 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 17.23 | 7.88 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 20.17 | 6.91 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 16.39 | 6.75 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 16.39 | 6.62 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 17.65 | 6.42 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 18.49 | 6.23 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 3.78 | 2.1 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G009940.2 | EnsemblPlantsGene:HORVU7Hr1G009940 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF108 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294E0AC | UniProt:M0WP28 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr7H:-:13624213..13628669
Molecular Weight (calculated)
26610.0 Da
IEP (calculated)
4.029
GRAVY (calculated)
-0.843
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVGPPGAF RRITVHYSTA GDDANHDDFL EYVIGDVLQH QDGLHQSWST HCCHGESSRG TAAETSGTSD EQIAADLKYA RMLQDMEDLD VDTPPNDDEE
101: DDISCVPSPS DTDDDDDRGD EEEAARQDDD DNDIDVDPDN MTYEERQELV ESVGNESRGL SDELMSYLVP WKYKSGSGFF SKKTNNDETC TVCLSAFKNR
201: ENIITLPCKH NYHATCITKW LKIDKTCPVC KYEVFGPS
101: DDISCVPSPS DTDDDDDRGD EEEAARQDDD DNDIDVDPDN MTYEERQELV ESVGNESRGL SDELMSYLVP WKYKSGSGFF SKKTNNDETC TVCLSAFKNR
201: ENIITLPCKH NYHATCITKW LKIDKTCPVC KYEVFGPS
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.