Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19166 | Sorghum | nucleus | 83.96 | 82.72 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 54.85 | 58.57 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 51.87 | 58.4 |
| TraesCS7A01G054700.2 | Wheat | nucleus | 54.85 | 58.33 |
| TraesCS4A01G441400.1 | Wheat | nucleus | 54.1 | 58.0 |
| Os06t0125800-01 | Rice | nucleus | 54.1 | 55.56 |
| Zm00001d021225_P002 | Maize | cytosol | 27.24 | 41.71 |
| Zm00001d048301_P001 | Maize | cytosol | 24.63 | 27.39 |
| Zm00001d027868_P004 | Maize | cytosol | 25.75 | 25.56 |
| Zm00001d002624_P003 | Maize | cytosol | 31.34 | 25.0 |
| Zm00001d026446_P001 | Maize | cytosol | 13.81 | 20.11 |
| Zm00001d019616_P001 | Maize | cytosol | 9.33 | 19.38 |
| Zm00001d015453_P001 | Maize | cytosol | 9.33 | 19.38 |
| Zm00001d013776_P001 | Maize | cytosol | 8.96 | 18.6 |
| Zm00001d006226_P001 | Maize | peroxisome | 21.64 | 18.24 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 19.03 | 17.77 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 20.52 | 17.08 |
| Zm00001d011636_P001 | Maize | nucleus | 16.42 | 13.02 |
| Zm00001d043784_P002 | Maize | nucleus | 16.42 | 12.72 |
| Zm00001d024406_P002 | Maize | nucleus | 16.04 | 12.01 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 16.79 | 11.72 |
| Zm00001d026248_P001 | Maize | nucleus | 16.42 | 11.58 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 16.42 | 11.08 |
| Zm00001d015323_P002 | Maize | cytosol | 4.48 | 10.62 |
| Zm00001d011541_P004 | Maize | nucleus | 20.9 | 10.57 |
| Zm00001d008649_P003 | Maize | cytosol | 19.03 | 9.68 |
| Zm00001d039769_P002 | Maize | cytosol | 19.03 | 9.26 |
| Zm00001d009571_P002 | Maize | nucleus | 17.16 | 8.98 |
| Zm00001d015289_P001 | Maize | nucleus | 18.66 | 8.83 |
| Zm00001d014609_P002 | Maize | nucleus | 16.79 | 7.69 |
| Zm00001d025027_P002 | Maize | nucleus | 19.4 | 7.47 |
| Zm00001d004300_P003 | Maize | nucleus | 18.66 | 7.2 |
| Zm00001d002080_P002 | Maize | nucleus | 16.42 | 6.64 |
| Zm00001d026445_P001 | Maize | nucleus | 16.04 | 6.56 |
| Zm00001d039015_P002 | Maize | cytosol | 8.96 | 5.87 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 10.82 | 4.72 |
Protein Annotations
| EMBL:BT061149 | EnsemblPlants:Zm00001d045517_P001 | EnsemblPlants:Zm00001d045517_T001 | EnsemblPlantsGene:Zm00001d045517 | EntrezGene:100272915 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF108 |
| PFAM:PF13639 | PFscan:PS50089 | ProteinID:AQL02466.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00019488DF | UniProt:C0HFP3 | MapMan:35.1 | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr9:-:25249729..25252528
Molecular Weight (calculated)
29217.2 Da
IEP (calculated)
4.155
GRAVY (calculated)
-0.691
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVGQSGAL RRVTVHYASS PTRGAVVEVS LDDLDDELLQ FVLADLLPGQ EGLHQSILEG AHGSNQENYM RGAGSSAPSQ EYHAQSSTAA AAAAASSRRN
101: PGTDDAQIAS DFEYATKLQQ EMEGLSVDDD GDGISCVPSP SDSDDGHDHQ NEEDEEEEDG NGGGDDDDDP DNMTYEQRQA LVESVGSEDR GLSDELISYL
201: QPWKYKASGF FSRKTNHDDC PICLSTFRNR ETMITLPCMH HYHAACVTKW LRVNKTCPVC KYELFGPC
101: PGTDDAQIAS DFEYATKLQQ EMEGLSVDDD GDGISCVPSP SDSDDGHDHQ NEEDEEEEDG NGGGDDDDDP DNMTYEQRQA LVESVGSEDR GLSDELISYL
201: QPWKYKASGF FSRKTNHDDC PICLSTFRNR ETMITLPCMH HYHAACVTKW LRVNKTCPVC KYELFGPC
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.