Factsheet for Zm00001d004300_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10483	Sorghum	nucleus	92.36	92.1
Zm00001d025027_P002	Maize	nucleus	86.74	86.49
GSMUA_Achr4P06090_001	Banana	cytosol	14.27	67.35
PGSC0003DMT400079217	Potato	cytosol	9.08	63.64
Os04t0185500-01	Rice	nucleus	64.12	62.76
TraesCS2B01G030700.1	Wheat	nucleus	62.68	62.05
TraesCS2D01G022900.1	Wheat	nucleus	62.39	61.77
TraesCS2A01G022100.1	Wheat	nucleus	62.1	61.48
HORVU2Hr1G003340.5	Barley	nucleus	62.54	61.47
Zm00001d026446_P001	Maize	cytosol	11.53	43.48
GSMUA_Achr4P12850_001	Banana	nucleus	22.33	33.99
Zm00001d015453_P001	Maize	cytosol	5.91	31.78
Zm00001d013776_P001	Maize	cytosol	5.76	31.01
Zm00001d019616_P001	Maize	cytosol	5.76	31.01
Bra015221.1-P	Field mustard	nucleus	24.06	27.97
Zm00001d026445_P001	Maize	nucleus	26.37	27.94
Zm00001d002080_P002	Maize	nucleus	26.22	27.45
VIT_03s0063g00160.t01	Wine grape	nucleus	28.96	27.38
GSMUA_Achr9P22530_001	Banana	nucleus	24.78	26.71
CDY37230	Canola	nucleus	22.33	26.32
CDY62314	Canola	nucleus	22.33	26.18
Bra039842.1-P	Field mustard	nucleus	22.48	26.13
Zm00001d021225_P002	Maize	cytosol	6.48	25.71
AT4G34040.1	Thale cress	nucleus	24.5	25.53
Zm00001d011636_P001	Maize	nucleus	12.39	25.44
Zm00001d043784_P002	Maize	nucleus	12.39	24.86
PGSC0003DMT400066252	Potato	nucleus	25.07	24.34
KRH50319	Soybean	nucleus	24.64	23.92
KRH70661	Soybean	mitochondrion, nucleus	24.78	23.59
Solyc01g107930.2.1	Tomato	nucleus	24.06	23.26
Solyc01g107940.2.1	Tomato	nucleus	23.34	22.91
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	23.34	22.31
Zm00001d026248_P001	Maize	nucleus	11.96	21.84
AT2G15530.4	Thale cress	nucleus	24.35	21.67
Zm00001d038909_P001	Maize	cytosol, mitochondrion	11.96	21.61
Zm00001d048301_P001	Maize	cytosol	7.35	21.16
Zm00001d039769_P002	Maize	cytosol	16.57	20.87
Zm00001d008649_P003	Maize	cytosol	15.71	20.68
Zm00001d024406_P002	Maize	nucleus	10.52	20.39
Zm00001d011541_P004	Maize	nucleus	15.56	20.38
Zm00001d015323_P002	Maize	cytosol	3.31	20.35
Zm00001d009571_P002	Maize	nucleus	14.55	19.73
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	11.24	19.65
Zm00001d045517_P001	Maize	mitochondrion, nucleus	7.2	18.66
Zm00001d027868_P004	Maize	cytosol	7.2	18.52
Zm00001d015289_P001	Maize	nucleus	14.99	18.37
Zm00001d014609_P002	Maize	nucleus	15.42	18.29
Zm00001d053212_P002	Maize	cytosol, mitochondrion, nucleus, plastid	7.49	18.12
Zm00001d021314_P005	Maize	cytosol, mitochondrion, nucleus	7.49	16.15
Zm00001d002624_P003	Maize	cytosol	7.78	16.07
Zm00001d006226_P001	Maize	peroxisome	7.06	15.41
Zm00001d039015_P002	Maize	cytosol	8.07	13.69
Zm00001d037536_P006	Maize	mitochondrion, plastid	9.94	11.22

Protein Annotations

EntrezGene:100280669	Gene3D:3.30.40.10	MapMan:35.1	UniProt:B6SKC6	EMBL:BT061449	EMBL:EU953191
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM18702.1
ProteinID:ONM18704.1	ProteinID:ONM18709.1	ProteinID:ONM18710.1	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF94	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000182AF2D	EnsemblPlantsGene:Zm00001d004300	EnsemblPlants:Zm00001d004300_P003
EnsemblPlants:Zm00001d004300_T003	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

E3 ubiquitin-protein ligase MBR2

Coordinates

chr2:+:101481769..101492289

Molecular Weight (calculated)

76013.0 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.599

Length

694 amino acids

Sequence
(BLAST)

001: MQHNRITMLS SSETCQLGSS SSNPVMDQQN LLPNNSNVDE QILLPNALEH EDYPHYLLNS HEVGMPSGSL IGQQNTSLSL WEPAGSSSME CLVDHDNFFQ
101: AKREHLASSR SIGAPLSIER RRHEGTSSLP SHNLNIDLNI NQADQFGSDD VDLAHGNGQP RANTVTAHRG SFITEHILHH GVSSDAIGNS SRNAECFVGA
201: AGQDSHHAAF KRKYLDGCHA ESSANGSSRN RHQNNSTLLP PPTTCESFTI PTATNFSVPY HPVEQLNQST NIAASSTLSD HYSSYSDPRG NEFVRNTRMR
301: INPSDYDQSL PSLLPEGSFR CSAYQSTQQQ SSFIPAQPRQ VSSSSGSHSR SHVPAVTQFS QNLRRPSTVS FGSRIGNSST SGSTIPIPAS QDPGTSLLGS
401: DYPEPLLLGS LFTADSTNFL SASGSISNQQ NSGSSSSSML RPAVNVGTQV PEFNVSQPST TLRGSSDVFR RSLISAGISH SRSSSIPLQH RGNSSTSHEI
501: RNHQPGSSSR AHQQHPLRPG HSSVDRQSSG YLDLQSFMQT IASREGGRPM SEIRNVFDQI RQGRNARLED LLLIDRSLIM RRANLIDRHR DMRLDVDNMS
601: YEELLALGER IGYVNTGLTE EKILSNLKQW KCVLKSLDDP PTSVEPCCIC QEDYVEGEDL GRLDCGHDFH TACIKQWLVI KNLCPICKKT ALDT

Best Arabidopsis Sequence Match ( AT2G15530.1 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.