Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015453_P001 | Maize | cytosol | 96.9 | 96.9 |
| Zm00001d019616_P001 | Maize | cytosol | 96.12 | 96.12 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 49.61 | 69.57 |
| Zm00001d015323_P002 | Maize | cytosol | 57.36 | 65.49 |
| Zm00001d026446_P001 | Maize | cytosol | 31.01 | 21.74 |
| Zm00001d015289_P001 | Maize | nucleus | 91.47 | 20.85 |
| CDY13429 | Canola | cytosol | 40.31 | 20.16 |
| CDX97032 | Canola | plastid | 51.16 | 19.7 |
| Bra024009.1-P | Field mustard | nucleus | 25.58 | 18.86 |
| CDY71882 | Canola | plastid | 51.16 | 18.86 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 49.61 | 17.25 |
| CDX85750 | Canola | nucleus | 48.84 | 16.32 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 66.67 | 15.25 |
| EES04530 | Sorghum | nucleus | 59.69 | 14.86 |
| KRH04957 | Soybean | nucleus | 60.47 | 14.66 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 65.89 | 14.58 |
| CDX95473 | Canola | nucleus | 51.16 | 14.22 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 65.89 | 14.1 |
| GSMUA_Achr10P... | Banana | nucleus | 54.26 | 13.83 |
| KRH16134 | Soybean | nucleus | 58.91 | 13.69 |
| CDX88140 | Canola | nucleus | 51.16 | 13.69 |
| CDY68658 | Canola | nucleus | 49.61 | 13.65 |
| AT5G24870.2 | Thale cress | nucleus | 54.26 | 13.46 |
| Os02t0150700-01 | Rice | extracellular | 66.67 | 13.42 |
| Solyc08g006460.2.1 | Tomato | nucleus | 54.26 | 13.18 |
| CDX78393 | Canola | nucleus | 50.39 | 13.16 |
| Bra006070.1-P | Field mustard | nucleus | 50.39 | 13.13 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 55.81 | 13.09 |
| CDX70363 | Canola | nucleus | 48.84 | 12.96 |
| CDX97044 | Canola | nucleus | 51.16 | 12.94 |
| Solyc12g096420.1.1 | Tomato | nucleus | 55.04 | 12.89 |
| PGSC0003DMT400067670 | Potato | nucleus | 52.71 | 12.88 |
| AT5G10650.2 | Thale cress | nucleus | 51.94 | 12.76 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 58.14 | 12.73 |
| Zm00001d014609_P002 | Maize | nucleus | 57.36 | 12.65 |
| Zm00001d021225_P002 | Maize | cytosol | 17.05 | 12.57 |
| KRH52597 | Soybean | nucleus | 52.71 | 12.57 |
| KRH61936 | Soybean | nucleus | 53.49 | 12.39 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 65.89 | 12.23 |
| Zm00001d024406_P002 | Maize | nucleus | 33.33 | 12.01 |
| PGSC0003DMT400075959 | Potato | nucleus | 50.39 | 11.93 |
| CDX69813 | Canola | mitochondrion | 48.06 | 11.63 |
| Bra009015.1-P | Field mustard | plastid | 48.06 | 11.63 |
| Zm00001d026248_P001 | Maize | nucleus | 34.11 | 11.58 |
| CDY63645 | Canola | nucleus | 41.09 | 11.47 |
| CDY13433 | Canola | nucleus | 41.09 | 11.37 |
| Bra024007.1-P | Field mustard | nucleus | 41.09 | 11.35 |
| AT4G31450.2 | Thale cress | nucleus | 41.09 | 10.66 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 53.49 | 10.62 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 31.01 | 10.08 |
| Zm00001d043784_P002 | Maize | nucleus | 24.81 | 9.25 |
| Zm00001d011636_P001 | Maize | nucleus | 24.03 | 9.17 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 27.13 | 9.11 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 18.6 | 8.96 |
| Zm00001d048301_P001 | Maize | cytosol | 16.28 | 8.71 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 19.38 | 8.71 |
| CDY40109 | Canola | nucleus | 12.4 | 8.6 |
| Zm00001d027868_P004 | Maize | cytosol | 16.28 | 7.78 |
| Zm00001d002080_P002 | Maize | nucleus | 36.43 | 7.09 |
| Zm00001d008649_P003 | Maize | cytosol | 28.68 | 7.02 |
| Zm00001d011541_P004 | Maize | nucleus | 28.68 | 6.98 |
| Zm00001d006226_P001 | Maize | peroxisome | 17.05 | 6.92 |
| Zm00001d026445_P001 | Maize | nucleus | 34.88 | 6.87 |
| Zm00001d002624_P003 | Maize | cytosol | 17.83 | 6.85 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 17.05 | 6.83 |
| Zm00001d039769_P002 | Maize | cytosol | 27.91 | 6.53 |
| Zm00001d025027_P002 | Maize | nucleus | 31.78 | 5.89 |
| Zm00001d009571_P002 | Maize | nucleus | 23.26 | 5.86 |
| Zm00001d004300_P003 | Maize | nucleus | 31.01 | 5.76 |
| Zm00001d039015_P002 | Maize | cytosol | 14.73 | 4.65 |
| Bra009800.1-P | Field mustard | nucleus | 13.95 | 4.39 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 16.28 | 3.41 |
Protein Annotations
| EnsemblPlants:Zm00001d013776_P001 | EnsemblPlants:Zm00001d013776_T001 | EnsemblPlantsGene:Zm00001d013776 | EntrezGene:103628051 | ncoils:Coil | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF60 | ProteinID:AQK64348.1 | SEG:seg | UniParc:UPI0004DEBF51 | UniProt:A0A1D6GM12 | MapMan:35.2 |
Description
RING/U-box superfamily protein
Coordinates
chr5:+:19902085..19903170
Molecular Weight (calculated)
14802.6 Da
IEP (calculated)
4.395
GRAVY (calculated)
-0.241
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHNLIGERD SHRHITMEGI TEVLAALERI EQQAELTYDQ LLMLEANLVF GAFASYDRHR DMRMDIDDMS YEELLALEER IGSVSTALSE EQFTKCLKRS
101: IYTQVALEVN KSTVDDMKCS ICQVSGNFT
101: IYTQVALEVN KSTVDDMKCS ICQVSGNFT
001: MDRWSSKRAM EARPDSKKKG GVVFRDRFNS NSCKVPICSD EKKSMNFTRF VGSSDKKEKS VLSTYRSSPN GKEVIGTSSK ICISSSSSVK SGEKQPFSQI
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK
Arabidopsis Description
At4g31450/F3L17_20 [Source:UniProtKB/TrEMBL;Acc:Q944Q9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.