Factsheet for Bra009800.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88140	Canola	nucleus	100.0	85.06
CDY68658	Canola	nucleus	91.71	80.17
AT5G24870.2	Thale cress	nucleus	72.68	57.31
Bra006070.1-P	Field mustard	nucleus	48.78	40.4
Bra009015.1-P	Field mustard	plastid	49.51	38.09
Bra028576.1-P	Field mustard	cytosol	23.9	34.63
VIT_04s0008g02390.t01	Wine grape	nucleus	40.0	29.82
KRH52597	Soybean	nucleus	37.32	28.28
KRH04957	Soybean	nucleus	34.88	26.88
Bra024009.1-P	Field mustard	nucleus	10.73	25.14
KRH16134	Soybean	nucleus	33.9	25.05
PGSC0003DMT400075959	Potato	nucleus	32.44	24.4
KRH61936	Soybean	nucleus	32.68	24.06
PGSC0003DMT400067670	Potato	nucleus	30.73	23.86
Solyc12g096420.1.1	Tomato	nucleus	31.46	23.41
Solyc08g006460.2.1	Tomato	nucleus	30.0	23.16
GSMUA_AchrUn_...	Banana	nucleus	12.44	22.67
TraesCS7B01G328500.1	Wheat	nucleus	26.83	19.03
TraesCS7D01G420400.1	Wheat	nucleus	26.59	19.02
Os06t0695600-01	Rice	nucleus	26.59	18.83
TraesCS6B01G149700.2	Wheat	nucleus	25.85	18.79
HORVU7Hr1G098540.1	Barley	nucleus	26.83	18.77
GSMUA_Achr1P23500_001	Banana	nucleus	23.41	18.68
KXG20741	Sorghum	nucleus	26.83	18.64
Zm00001d014609_P002	Maize	nucleus	26.59	18.63
TraesCS6A01G121400.2	Wheat	nucleus	26.1	18.35
EES04530	Sorghum	nucleus	22.68	17.95
TraesCS6D01G111500.2	Wheat	nucleus	25.85	17.58
Zm00001d015289_P001	Maize	nucleus	24.15	17.49
Bra003830.1-P	Field mustard	nucleus, plastid	13.17	15.93
Bra015967.1-P	Field mustard	nucleus	13.66	15.69
TraesCS7A01G428300.2	Wheat	nucleus	22.2	15.66
Bra019499.1-P	Field mustard	nucleus	6.1	15.24
HORVU2Hr1G101370.5	Barley	nucleus	13.9	15.2
Os08t0241400-00	Rice	nucleus	13.9	15.12
TraesCS2B01G456100.1	Wheat	nucleus	13.66	15.01
EES12797	Sorghum	nucleus	13.66	14.97
TraesCS2A01G437200.1	Wheat	nucleus	13.41	14.91
Os02t0150700-01	Rice	extracellular	23.17	14.82
Zm00001d024406_P002	Maize	nucleus	12.93	14.8
OQU80147	Sorghum	nucleus	12.93	14.8
TraesCS2D01G432800.1	Wheat	nucleus	13.41	14.78
Zm00001d019616_P001	Maize	cytosol	4.63	14.73
HORVU6Hr1G022370.10	Barley	mitochondrion	24.88	14.68
Bra016574.1-P	Field mustard	nucleus	12.44	14.25
Zm00001d026248_P001	Maize	nucleus	13.17	14.21
Zm00001d013776_P001	Maize	cytosol	4.39	13.95
Zm00001d015453_P001	Maize	cytosol	4.39	13.95
Bra040450.1-P	Field mustard	nucleus	8.05	13.64
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	13.17	13.6
Bra024007.1-P	Field mustard	nucleus	14.39	12.63
Bra022580.1-P	Field mustard	cytosol	5.12	11.67
Bra027467.1-P	Field mustard	nucleus	11.46	11.46
Bra039842.1-P	Field mustard	nucleus	16.59	11.39
Bra015221.1-P	Field mustard	nucleus	14.88	10.22
Os04t0603200-01	Rice	nucleus	8.05	10.03
Bra022466.1-P	Field mustard	nucleus	7.8	9.88
Bra017205.1-P	Field mustard	nucleus	12.93	9.87
Bra033652.1-P	Field mustard	nucleus	14.63	9.76
Bra038240.1-P	Field mustard	nucleus	7.8	9.61
Bra023101.1-P	Field mustard	nucleus	12.44	9.57
Bra001582.1-P	Field mustard	nucleus	10.0	9.38
Bra039659.1-P	Field mustard	nucleus	10.49	9.35
Bra014043.1-P	Field mustard	nucleus	12.93	9.2
Bra027282.1-P	Field mustard	nucleus	9.51	8.76
Bra038109.1-P	Field mustard	nucleus	10.24	8.75
HORVU3Hr1G054920.1	Barley	cytosol	1.71	7.61
Bra028293.1-P	Field mustard	nucleus	2.68	4.6
Bra036336.1-P	Field mustard	nucleus	5.61	4.57
Bra022579.1-P	Field mustard	cytosol	0.98	3.03

Protein Annotations

EnsemblPlants:Bra009800.1	EnsemblPlants:Bra009800.1-P	EnsemblPlantsGene:Bra009800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF53	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253F26D	UniProt:M4D003	MapMan:35.2

Description

AT5G24870 (E=3e-038) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA06:-:17352098..17353793

Molecular Weight (calculated)

44302.0 Da

IEP (calculated)

11.113

GRAVY (calculated)

-0.894

Length

410 amino acids

Sequence
(BLAST)

001: MDGLKGKRTA APVMPPRRAS GLVLHENMKK KDDKTVPTCS RVSCSSRISS NKGLSIDHKP KSTVRSPSNG KETVGSSSSR TTSGLTKTPK VTTRRQLSSL
101: LDTDSSESSS SSVHERRGKT KESSVIREVV TEPGSSSRGS SGNGVQSARV GVNRNGLKDL RSSVLPSSPN PTRKISTFRK KPSDGESSSS SRGNNNKPEV
201: KNNQSSLPHG NNGIITMSES RRNRNSPSVR DNNSVVSSSS TRRSSTGRTT GRASGAVTAL QAPPQPATRA GLINPSRSNT EVSRSPLHSY SRPISSNNGR
301: LRSLMMMPGG SPSRSLMSRD GFRRYDEALL KSLKLSTFNR PTEKSGGVCL KKDDDVKCSI CQEEYVDGDE VGTLPCQHMY HVSCAQQWLR MKNWCPICKT
401: SAESQPQPFS

Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.