Factsheet for TraesCS2B01G456100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G432800.1	Wheat	nucleus	96.25	96.51
TraesCS2A01G437200.1	Wheat	nucleus	95.17	96.21
HORVU2Hr1G101370.5	Barley	nucleus	94.64	94.13
EES12797	Sorghum	nucleus	63.27	63.1
Os04t0603200-01	Rice	nucleus	55.23	62.61
Zm00001d026248_P001	Maize	nucleus	60.32	59.21
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	61.93	58.19
Bra024009.1-P	Field mustard	nucleus	14.48	30.86
CDY13429	Canola	cytosol	19.03	27.52
CDX97032	Canola	plastid	23.59	26.27
TraesCS5B01G279200.1	Wheat	cytosol	8.58	26.23
CDY71882	Canola	plastid	23.86	25.43
CDX85750	Canola	nucleus	25.47	24.61
TraesCS3B01G293600.1	Wheat	nucleus	21.18	23.03
CDY40109	Canola	nucleus	11.26	22.58
TraesCS5B01G313800.1	Wheat	cytosol, nucleus, plastid	9.92	21.64
TraesCS1B01G393400.2	Wheat	nucleus	19.57	20.98
CDX78393	Canola	nucleus	27.08	20.45
CDX70363	Canola	nucleus	26.54	20.37
CDX95473	Canola	nucleus	25.2	20.26
Bra006070.1-P	Field mustard	nucleus	26.81	20.2
CDX97044	Canola	nucleus	26.81	19.61
KRH04957	Soybean	nucleus	27.61	19.36
KRH16134	Soybean	nucleus	28.42	19.1
Bra009015.1-P	Field mustard	plastid	26.81	18.76
CDX69813	Canola	mitochondrion	26.54	18.57
VIT_04s0008g02390.t01	Wine grape	nucleus	27.35	18.55
KRH52597	Soybean	nucleus	26.81	18.48
AT5G10650.2	Thale cress	nucleus	26.01	18.48
CDY68658	Canola	nucleus	23.06	18.34
Solyc08g006460.2.1	Tomato	nucleus	25.74	18.08
AT5G24870.2	Thale cress	nucleus	25.2	18.08
CDX88140	Canola	nucleus	23.06	17.84
PGSC0003DMT400067670	Potato	nucleus	24.93	17.61
TraesCS7B01G328500.1	Wheat	nucleus	27.08	17.47
PGSC0003DMT400075959	Potato	nucleus	25.2	17.25
TraesCS6B01G149700.2	Wheat	nucleus	25.74	17.02
Solyc12g096420.1.1	Tomato	nucleus	24.66	16.7
TraesCS2B01G418300.1	Wheat	cytosol	11.26	16.6
Bra024007.1-P	Field mustard	nucleus	20.64	16.49
CDY63645	Canola	nucleus	20.38	16.45
TraesCS4B01G191300.1	Wheat	nucleus	11.53	16.41
CDY13433	Canola	nucleus	20.38	16.31
AT4G31450.2	Thale cress	nucleus	21.18	15.9
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	12.6	15.72
KRH61936	Soybean	nucleus	21.98	14.72
TraesCS1B01G129600.1	Wheat	nucleus	20.64	14.42
TraesCS3B01G120600.2	Wheat	cytosol	19.57	14.09
Bra009800.1-P	Field mustard	nucleus	15.01	13.66
TraesCS2B01G542200.2	Wheat	nucleus	24.4	13.58
TraesCS3B01G272400.4	Wheat	nucleus	19.03	13.45
TraesCS2B01G030700.1	Wheat	nucleus	24.93	13.27
TraesCS5B01G325800.1	Wheat	mitochondrion	12.87	12.7
TraesCS1B01G426200.9	Wheat	cytosol	18.5	12.59

Protein Annotations

EnsemblPlants:TraesCS2B01G456100.1	EnsemblPlantsGene:TraesCS2B01G456100	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF46	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2B:+:650789626..650791042

Molecular Weight (calculated)

40034.7 Da

IEP (calculated)

9.175

GRAVY (calculated)

-0.784

Length

373 amino acids

Sequence
(BLAST)

001: MDEHMGRRTV GGLLFTKGGS ILLFREDSSR RKAGACCSRN GCNGTRHSAD KGRPMHSHRE AASAAAKEAA PTPRRSQPVR KPPQGSSNPA GPCSETDNGT
101: GEAAAPGAGR DLLARLKDRV NASRKRSLAR EMSSPSSSSG GFSASSSGGG ATRSSAVSRP TRRAASRIRK ADEGESAGGS RRVPRRDTGG GGGARGNSDD
201: PVMVGQRAAR EQAPTEGFIS GFLARYRGSL QGGSSLQDGA EDSSGYWRFD VEGSEELENY FMLSDRHRAM RMDIDGMSYE ELLALGDRIG TVNTGLSEDA
301: LYKCLKRSLY TPTAPETHQD CDRKCSICQE EYSGGEEVGN MACKHYYHIA CIQHWLRQKN WCPICKSVAA KTV

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.