Factsheet for TraesCS3B01G272400.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G244600.1	Wheat	nucleus	98.11	98.11
TraesCS3A01G246900.3	Wheat	nucleus	97.54	97.72
HORVU3Hr1G061010.4	Barley	nucleus	93.56	93.92
Os01t0667700-02	Rice	nucleus	75.57	76.14
EES03404	Sorghum	nucleus	72.16	73.13
Zm00001d011541_P004	Maize	nucleus	71.21	70.94
TraesCS1B01G426200.9	Wheat	cytosol	41.86	40.33
TraesCS5B01G313800.1	Wheat	cytosol, nucleus, plastid	7.39	22.81
Bra039659.1-P	Field mustard	nucleus	19.7	22.61
CDY24110	Canola	nucleus	19.7	22.61
TraesCS3B01G293600.1	Wheat	nucleus	14.58	22.45
KRH26195	Soybean	nucleus	19.13	22.05
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	16.29	21.88
VIT_19s0014g01850.t01	Wine grape	nucleus	22.16	21.75
KRH55161	Soybean	nucleus	18.75	21.62
KRH30071	Soybean	cytosol	14.02	21.51
CDY26006	Canola	nucleus	18.75	21.43
CDY68521	Canola	nucleus	17.8	21.32
PGSC0003DMT400039631	Potato	nucleus	21.59	21.27
AT1G53190.1	Thale cress	nucleus	19.89	21.26
Solyc12g014070.1.1	Tomato	nucleus	21.4	21.12
TraesCS4B01G191300.1	Wheat	nucleus	10.42	20.99
CDX82450	Canola	nucleus	17.8	20.98
KRH55165	Soybean	nucleus	12.31	20.9
Bra001582.1-P	Field mustard	nucleus	17.23	20.82
AT3G15070.1	Thale cress	nucleus	19.13	20.78
CDX75805	Canola	cytosol	17.42	20.77
CDX97629	Canola	nucleus	17.23	20.63
TraesCS5B01G279200.1	Wheat	cytosol	4.73	20.49
Bra027282.1-P	Field mustard	nucleus	17.23	20.45
VIT_03s0097g00680.t01	Wine grape	nucleus	16.29	20.43
CDY25871	Canola	nucleus	18.37	20.29
CDY55839	Canola	nucleus	18.75	20.25
Bra038109.1-P	Field mustard	nucleus	18.37	20.21
VIT_03s0088g01090.t01	Wine grape	nucleus	17.05	19.69
KRH22017	Soybean	nucleus	19.51	19.51
TraesCS2B01G418300.1	Wheat	cytosol	9.28	19.37
Solyc10g007140.2.1	Tomato	nucleus	18.94	19.27
TraesCS3B01G120600.2	Wheat	cytosol	18.75	19.11
PGSC0003DMT400054921	Potato	nucleus	18.75	19.08
TraesCS2B01G456100.1	Wheat	nucleus	13.45	19.03
TraesCS1B01G393400.2	Wheat	nucleus	12.31	18.68
KRH55090	Soybean	nucleus	13.07	18.55
TraesCS1B01G129600.1	Wheat	nucleus	17.8	17.6
TraesCS2B01G542200.2	Wheat	nucleus	19.7	15.52
TraesCS7B01G170500.1	Wheat	cytosol, mitochondrion, nucleus	8.71	15.38
TraesCS6B01G149700.2	Wheat	nucleus	15.34	14.36
TraesCS2B01G030700.1	Wheat	nucleus	18.94	14.27
TraesCS5B01G325800.1	Wheat	mitochondrion	10.04	14.02
TraesCS7B01G328500.1	Wheat	nucleus	14.96	13.67
Solyc07g062720.1.1	Tomato	nucleus	18.75	12.77
PGSC0003DMT400032385	Potato	nucleus	19.32	12.56

Protein Annotations

EnsemblPlants:TraesCS3B01G272400.4	EnsemblPlantsGene:TraesCS3B01G272400	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3B:-:438539391..438545270

Molecular Weight (calculated)

57523.7 Da

IEP (calculated)

6.622

GRAVY (calculated)

-0.492

Length

528 amino acids

Sequence
(BLAST)

001: MAYRMVCAPQ VIDLESGRGH PHVHSESLIH NGNDLSDQGG QYTVRVVGNA MNAGLSDTQG YYNMSMNHPH QPVHSSLPNL GVDSGFVFPS NMYNPCMSTS
101: MNRYVSHAQS FGLPLNQVVS GSMDGSTRNE NVSETARGFI KRKNAAVAGS CHFVNGSASS SSSSHTSQNP THRPWDPSFE SNVFPNVTPF NPSEYHSHST
201: WPSVEGSSIT GSNGFNLMAA HPESAQHGNY TFQSSHASQC FQPASTTWVS QAATGIVEGV PQWSYINAMS SVPAGRFAHS GATEIVNGGF HEYQNGPSTI
301: SQGHLPYFHQ HAVHSMQAHN PLDHTQVQVP YQQGHNNGVL HSGVNHSGNR VHLGPRTPGL FSNSERSFGP PQHPFLVNPV NPRNIRILPP LQHGAIMDFS
401: RLYEGSNVVD EHRDMRLDID SMTYEELLAL EEHIGDVNTG LAKSHIVDKL KTSLYVPGAT CVSNQSSEPS TENEACIICQ EEYEAEDCVG ILDCGHRYHA
501: ECLKQWLTVK NLCPICKTTA LSAGRRSG

Best Arabidopsis Sequence Match ( AT1G53190.1 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.